iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Obr-076429

Ensembl Protein ID

OB03G38710.1

UniProt Accession

J3LS45; J3LS45_ORYBR

Protein Name

Coatomer subunit alpha

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OB03G38710	OB03G38710.1	OB03G38710.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-38	130.3	50	86
UBD/Beta-Prp	3.10e-77	260.4	3	323

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           H ++v++++f  + +l+vsG+dD +ikvW+++t+++l
   Q: 50   HDGPVRGVHFhaTQPLFVSGGDDYKIKVWNYKTHRCL 86
           99*********6449********************98 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsl 100
           t +++++++++ ++f+p +++++++  +g i+ wd+++g+ll ++ +h+++v+ v f+ +++++v+g++D+ ikvw+++t  c+ tl+gh d+++++
   Q: 3    TKFETKSNRVKGLTFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTV 99
           67889999***************************************************************************************** PP
   S: 101  sfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl...........................ktgk 170
           +f+ +  ++vs+s+d+tir+w++++++c+  +l+gh++ v+c+++hp+++l+vs+slD+tvr+Wd                              + 
   Q: 100  QFHHECPWIVSASDDQTIRIWNWQSRTCVA-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDTsalrkksvspaddilrltqmntdlfggVDAV 195
           ******************************.**************************************************7777777777644444 PP
   S: 171  llrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec..vrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhns 265
           + + l+g h++ v++ sf+++ + +vsg++d++vklw +  ++   v+tl+gh +nv++v f+ +++++vs s+D+siriWd ++++ ++t+ ++++
   Q: 196  VKYVLEG-HDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAweVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGVQTFRREHD 291
           4444466.********************************777668*************************************************** PP
   S: 266  svisvavlsfgdnvlvlgsedskvniwklkknep 299
           +++  a+ +++ n l++g  ds   ++kl++++p
   Q: 292  RFWILAA-HPEMNLLAAG-HDSGMIVFKLERERP 323
           *******.6666655555.689999999988765 PP

Organism

Oryza brachyantha

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.

Protein Sequence
(Fasta)

MLTKFETKSN RVKGLTFHPR RPWILASLHS GVIQMWDYRM GTLLDRFDEH DGPVRGVHFH 60
ATQPLFVSGG DDYKIKVWNY KTHRCLFTLH GHLDYIRTVQ FHHECPWIVS ASDDQTIRIW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCAGATCCA GCACCTCCTC CTCCGCTCGC CTCAGGGGCT CGCCTCCGCC GTCGCCGTCG 60
CCGGGGACGA CGAGCCGGGG CCCAGCGAAG ATGCTGACCA AGTTCGAGAC GAAGAGCAAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR016391--Coatomer_asu
IPR010714--Coatomer_asu_C
IPR006692--Coatomer_WD-assoc_reg
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF06957--COPI_C
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

KEGG

obr:102711957

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000064	Aegilops tauschii	92.37	0.00e+00	2271.00
IUUC-Aml-001758	Ailuropoda melanoleuca	54.32	0.00e+00	1337.00
IUUC-Atr-002493	Amborella trichopoda	79.51	0.00e+00	1964.00
IUUC-Apl-003385	Anas platyrhynchos	49.91	0.00e+00	1030.00
IUUC-Aca-005154	Anolis carolinensis	76.08	4.00e-94	335.00
IUUC-Aly-005526	Arabidopsis lyrata	74.94	0.00e+00	1868.00
IUUC-Ath-007058	Arabidopsis thaliana	78.11	0.00e+00	1954.00
IUUC-Ago-007992	Ashbya gossypii	43.51	0.00e+00	981.00
IUUC-Acl-008027	Aspergillus clavatus	54.57	0.00e+00	961.00
IUUC-Afl-008644	Aspergillus flavus	55.44	0.00e+00	969.00
IUUC-Afu-008964	Aspergillus fumigatus	52.52	0.00e+00	969.00
IUUC-Ani-009379	Aspergillus nidulans	55.34	0.00e+00	975.00
IUUC-Ang-009756	Aspergillus niger	55.18	0.00e+00	974.00
IUUC-Aor-010174	Aspergillus oryzae	55.44	0.00e+00	968.00
IUUC-Ate-010302	Aspergillus terreus	46.87	0.00e+00	1148.00
IUUC-Ame-011229	Astyanax mexicanus	53.16	0.00e+00	1303.00
IUUC-Bgr-012300	Blumeria graminis	45.99	0.00e+00	1065.00
IUUC-Bta-012524	Bos taurus	54.79	0.00e+00	1331.00
IUUC-Bci-013781	Botrytis cinerea	46.73	0.00e+00	1116.00
IUUC-Bdi-014549	Brachypodium distachyon	89.01	0.00e+00	2264.00
IUUC-Bol-015925	Brassica oleracea	76.41	0.00e+00	1915.00
IUUC-Bra-016978	Brassica rapa	77.13	0.00e+00	1937.00
IUUC-Cel-018115	Caenorhabditis elegans	54.57	0.00e+00	929.00
IUUC-Cja-019107	Callithrix jacchus	53.72	0.00e+00	1321.00
IUUC-Cfa-020675	Canis familiaris	53.98	0.00e+00	1309.00
IUUC-Cpo-021813	Cavia porcellus	55.13	0.00e+00	1349.00
IUUC-Cre-022969	Chlamydomonas reinhardtii	68.75	0.00e+00	1228.00
IUUC-Csa-023523	Chlorocebus sabaeus	54.96	0.00e+00	1353.00
IUUC-Cho-024704	Choloepus hoffmanni	69.45	3.00e-131	462.00
IUUC-Cin-025572	Ciona intestinalis	49.76	0.00e+00	1231.00
IUUC-Csv-025864	Ciona savignyi	56.19	0.00e+00	966.00
IUUC-Cgl-026510	Colletotrichum gloeosporioides	55.70	0.00e+00	978.00
IUUC-Cne-027053	Cryptococcus neoformans	58.29	0.00e+00	1024.00
IUUC-Dre-027421	Danio rerio	53.90	0.00e+00	1325.00
IUUC-Dno-029303	Dasypus novemcinctus	54.88	0.00e+00	1350.00
IUUC-Dor-030290	Dipodomys ordii	52.46	4.00e-164	571.00
IUUC-Dse-031543	Dothistroma septosporum	45.73	0.00e+00	1053.00
IUUC-Dme-031945	Drosophila melanogaster	51.99	0.00e+00	1241.00
IUUC-Ete-032873	Echinops telfairi	59.59	0.00e+00	1036.00
IUUC-Eca-033773	Equus caballus	54.21	0.00e+00	1308.00
IUUC-Eeu-034874	Erinaceus europaeus	41.88	0.00e+00	656.00
IUUC-Fca-035739	Felis catus	53.66	0.00e+00	1311.00
IUUC-Fal-037263	Ficedula albicollis	50.97	0.00e+00	1194.00
IUUC-Fox-037738	Fusarium oxysporum	47.22	0.00e+00	1124.00
IUUC-Fso-038153	Fusarium solani	46.76	0.00e+00	1109.00
IUUC-Gmo-039602	Gadus morhua	50.36	0.00e+00	1215.00
IUUC-Ggr-039931	Gaeumannomyces graminis	54.20	0.00e+00	960.00
IUUC-Gga-040590	Gallus gallus	54.69	0.00e+00	1347.00
IUUC-Gac-041318	Gasterosteus aculeatus	54.13	0.00e+00	1326.00
IUUC-Gma-043894	Glycine max	76.90	0.00e+00	1970.00
IUUC-Ggo-045029	Gorilla gorilla	54.56	0.00e+00	1344.00
IUUC-Hsa-046078	Homo sapiens	54.48	0.00e+00	1343.00
IUUC-Hvu-047316	Hordeum vulgare	92.49	0.00e+00	2216.00
IUUC-Itr-048881	Ictidomys tridecemlineatus	46.51	0.00e+00	739.00
IUUC-Kpa-049256	Komagataella pastoris	52.29	0.00e+00	907.00
IUUC-Lch-049706	Latimeria chalumnae	53.89	0.00e+00	1337.00
IUUC-Lpe-051316	Leersia perrieri	95.57	0.00e+00	2316.00
IUUC-Loc-051867	Lepisosteus oculatus	50.00	0.00e+00	816.00
IUUC-Lma-053138	Leptosphaeria maculans	55.35	0.00e+00	997.00
IUUC-Laf-053510	Loxodonta africana	55.04	0.00e+00	1367.00
IUUC-Mcc-055836	Macaca mulatta	54.49	0.00e+00	1339.00
IUUC-Meu-056238	Macropus eugenii	56.51	0.00e+00	772.00
IUUC-Mor-057172	Magnaporthe oryzae	46.19	0.00e+00	1093.00
IUUC-Mpo-057300	Magnaporthe poae	53.49	0.00e+00	970.00
IUUC-Mtr-058248	Medicago truncatula	76.66	0.00e+00	1963.00
IUUC-Mla-059019	Melampsora laricipopulina	49.36	0.00e+00	1197.00
IUUC-Mga-059499	Meleagris gallopavo	54.68	0.00e+00	1344.00
IUUC-Mvi-060336	Microbotryum violaceum	50.24	0.00e+00	1201.00
IUUC-Mmr-061102	Microcebus murinus	54.24	0.00e+00	1328.00
IUUC-Mdo-062594	Monodelphis domestica	55.17	0.00e+00	1370.00
IUUC-Mmu-063736	Mus musculus	54.21	0.00e+00	1335.00
IUUC-Mac-065272	Musa acuminata	73.26	0.00e+00	1838.00
IUUC-Mpu-066701	Mustela putorius furo	54.71	0.00e+00	1349.00
IUUC-Mlu-067392	Myotis lucifugus	54.96	0.00e+00	1338.00
IUUC-Nfi-068270	Neosartorya fischeri	54.93	0.00e+00	967.00
IUUC-Ncr-068892	Neurospora crassa	47.21	0.00e+00	1103.00
IUUC-Nle-069634	Nomascus leucogenys	65.57	0.00e+00	945.00
IUUC-Opr-070952	Ochotona princeps	42.56	0.00e+00	643.00
IUUC-Ont-072488	Oreochromis niloticus	53.76	0.00e+00	1319.00
IUUC-Ocu-074211	Oryctolagus cuniculus	54.79	0.00e+00	1343.00
IUUC-Oba-075761	Oryza barthii	94.83	0.00e+00	2321.00
IUUC-Ogl-077364	Oryza glaberrima	95.32	0.00e+00	2328.00
IUUC-Ogu-078257	Oryza glumaepatula	94.94	0.00e+00	2252.00
IUUC-Oin-079274	Oryza indica	95.16	0.00e+00	2323.00
IUUC-Ome-081993	Oryza meridionalis	95.53	0.00e+00	1528.00
IUUC-Oni-082874	Oryza nivara	95.24	0.00e+00	2324.00
IUUC-Opu-083885	Oryza punctata	95.41	0.00e+00	2348.00
IUUC-Oru-084274	Oryza rufipogon	95.24	0.00e+00	2327.00
IUUC-Osa-085565	Oryza sativa	95.24	0.00e+00	2327.00
IUUC-Ola-086921	Oryzias latipes	52.86	0.00e+00	1301.00
IUUC-Olu-087639	Ostreococcus lucimarinus	60.34	0.00e+00	1526.00
IUUC-Oga-087991	Otolemur garnettii	52.05	0.00e+00	1254.00
IUUC-Oar-089590	Ovis aries	54.71	0.00e+00	1346.00
IUUC-Ptr-090808	Pan troglodytes	54.56	0.00e+00	1345.00
IUUC-Pan-092475	Papio anubis	54.67	0.00e+00	1345.00
IUUC-Psi-093044	Pelodiscus sinensis	53.88	0.00e+00	888.00
IUUC-Ppa-095785	Physcomitrella patens	68.73	0.00e+00	1774.00
IUUC-Pfo-097493	Poecilia formosa	54.00	0.00e+00	1321.00
IUUC-Pab-098497	Pongo abelii	54.88	0.00e+00	1353.00
IUUC-Pop-100086	Populus trichocarpa	80.02	0.00e+00	1995.00
IUUC-Pca-100413	Procavia capensis	60.07	0.00e+00	686.00
IUUC-Ppe-101392	Prunus persica	79.52	0.00e+00	2016.00
IUUC-Pva-102126	Pteropus vampyrus	52.40	0.00e+00	1269.00
IUUC-Pgr-103376	Puccinia graminis	50.40	0.00e+00	1213.00
IUUC-Pte-104126	Pyrenophora teres	54.68	0.00e+00	950.00
IUUC-Pyt-104778	Pyrenophora triticirepentis	45.84	8.00e-178	616.00
IUUC-Rno-105428	Rattus norvegicus	54.60	0.00e+00	1342.00
IUUC-Sce-106464	Saccharomyces cerevisiae	41.73	0.00e+00	932.00
IUUC-Sha-107301	Sarcophilus harrisii	54.20	0.00e+00	1330.00
IUUC-Sja-107961	Schizosaccharomyces japonicus	43.97	0.00e+00	1051.00
IUUC-Spo-108217	Schizosaccharomyces pombe	43.71	0.00e+00	1038.00
IUUC-Ssl-108643	Sclerotinia sclerotiorum	54.27	0.00e+00	961.00
IUUC-Smo-109582	Selaginella moellendorffii	73.73	0.00e+00	1358.00
IUUC-Sit-109697	Setaria italica	92.62	0.00e+00	2280.00
IUUC-Sly-111759	Solanum lycopersicum	79.44	0.00e+00	2017.00
IUUC-Stu-112564	Solanum tuberosum	79.61	0.00e+00	2018.00
IUUC-Sar-113313	Sorex araneus	42.39	0.00e+00	627.00
IUUC-Sbi-114388	Sorghum bicolor	92.62	0.00e+00	2275.00
IUUC-Sre-115209	Sporisorium reilianum	55.54	0.00e+00	999.00
IUUC-Ssc-115933	Sus scrofa	54.79	0.00e+00	1345.00
IUUC-Tru-117772	Takifugu rubripes	54.01	0.00e+00	1299.00
IUUC-Tsy-119105	Tarsius syrichta	51.88	0.00e+00	1026.00
IUUC-Tni-120556	Tetraodon nigroviridis	41.71	0.00e+00	872.00
IUUC-Tca-121046	Theobroma cacao	79.00	0.00e+00	1990.00
IUUC-Tre-121951	Trichoderma reesei	54.14	0.00e+00	967.00
IUUC-Tvi-122359	Trichoderma virens	54.63	0.00e+00	978.00
IUUC-Tae-125527	Triticum aestivum	92.70	0.00e+00	2285.00
IUUC-Tur-126754	Triticum urartu	91.30	0.00e+00	2241.00
IUUC-Tme-127170	Tuber melanosporum	47.90	0.00e+00	1167.00
IUUC-Tbe-127882	Tupaia belangeri	68.39	2.00e-127	449.00
IUUC-Ttr-128217	Tursiops truncatus	52.64	0.00e+00	1275.00
IUUC-Uma-129337	Ustilago maydis	55.78	0.00e+00	997.00
IUUC-Vda-129828	Verticillium dahliae	46.75	0.00e+00	1109.00
IUUC-Vpa-130537	Vicugna pacos	54.24	0.00e+00	1320.00
IUUC-Vvi-130958	Vitis vinifera	79.44	0.00e+00	2000.00
IUUC-Xtr-132857	Xenopus tropicalis	52.32	0.00e+00	1254.00
IUUC-Xma-133138	Xiphophorus maculatus	54.00	0.00e+00	1323.00
IUUC-Yli-134399	Yarrowia lipolytica	49.48	0.00e+00	838.00
IUUC-Zma-135612	Zea mays	89.83	0.00e+00	2299.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence