iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Atr-002899

Ensembl Protein ID

ERN10202

UniProt Accession

W1PJR1; W1PJR1_AMBTC

Genbank Protein ID

ERN10202.1

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

KI392934

Gene Name

AMTR_s00171p00033150

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AMTR_s00171p00033150	ERN10202	ERN10202

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.90e-37	126.1	151	189
UBD/Beta-Prp	1.30e-57	195.7	24	265

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+++k+WDl+ g+ll+
   Q: 151  GHTRGVNAIRFtPDgRWVVSGGEDNVVKLWDLTAGKLLH 189
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgd 107
           +h+s ++c+k+ ++++++l+tg++d+++ +w + +++++ slsgh+++v +v+f++ + + + g+  +tik+wdl+  k+v+tl+gh ++  s++f+p g+
   Q: 24   AHSSNVNCLKIgKKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSAVESVSFDSAEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 124
           799999***************************************************9999999999********************************** PP
   S: 108  klvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwd 208
           +++sGs d  +++wd++ + c++ t +gh++ vn +++ pdg+ +vsG+ D++v+lWdl  gkll++++  h++++++++f++  + l++gs d+tvk+wd
   Q: 125  FFASGSLDTNLKIWDIRRKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNVVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSADKTVKFWD 223
           ***********************.********************************************98.****************************** PP
   S: 209  lqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiri..W 249
           l+t e + +     + v+s+ f p++  l++g  ++s+++  W
   Q: 224  LETFELIGSAGPEASGVRSMTFNPDGRTLLCGL-HESLKVfsW 265
           ***********************9999999995.667776234 PP

Organism

Amborella trichopoda

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MRFDFILSSE FDCLDCTNSE EFVAHSSNVN CLKIGKKSSR VLVTGGEDHK VNLWAIGKPN 60
AILSLSGHTS AVESVSFDSA EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH RSNCISVDFH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGATTTG ATTTCATTTT GTCGAGTGAA TTTGATTGTC TTGACTGCAC AAATTCAGAA 60
GAATTTGTGG CTCATTCGTC CAATGTCAAC TGCCTCAAGA TTGGGAAGAA ATCCTCCAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000873	Aegilops tauschii	41.18	3.00e-162	564.00
IUUC-Aml-002187	Ailuropoda melanoleuca	53.42	1.00e-99	356.00
IUUC-Apl-003305	Anas platyrhynchos	54.61	3.00e-103	367.00
IUUC-Aca-004635	Anolis carolinensis	52.74	2.00e-90	325.00
IUUC-Aly-005711	Arabidopsis lyrata	53.45	0.00e+00	806.00
IUUC-Ath-007606	Arabidopsis thaliana	53.87	0.00e+00	809.00
IUUC-Bgr-012225	Blumeria graminis	30.87	2.00e-29	122.00
IUUC-Bta-012527	Bos taurus	54.45	9.00e-103	366.00
IUUC-Bdi-014552	Brachypodium distachyon	47.98	0.00e+00	691.00
IUUC-Bol-016374	Brassica oleracea	53.70	0.00e+00	800.00
IUUC-Bra-017390	Brassica rapa	53.58	0.00e+00	803.00
IUUC-Cja-019706	Callithrix jacchus	54.45	3.00e-102	364.00
IUUC-Cfa-020139	Canis familiaris	45.69	8.00e-95	339.00
IUUC-Cpo-021710	Cavia porcellus	51.21	6.00e-104	370.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	45.33	3.00e-82	298.00
IUUC-Csa-023546	Chlorocebus sabaeus	54.61	4.00e-99	354.00
IUUC-Cin-025156	Ciona intestinalis	47.59	1.00e-85	309.00
IUUC-Csv-025962	Ciona savignyi	49.47	2.00e-84	304.00
IUUC-Dre-028215	Danio rerio	53.77	3.00e-101	361.00
IUUC-Dno-029314	Dasypus novemcinctus	54.11	3.00e-102	364.00
IUUC-Dor-030482	Dipodomys ordii	54.45	4.00e-103	367.00
IUUC-Dme-032188	Drosophila melanogaster	37.19	4.00e-57	215.00
IUUC-Eca-034143	Equus caballus	54.11	1.00e-99	356.00
IUUC-Fca-035924	Felis catus	54.11	1.00e-102	366.00
IUUC-Fal-037387	Ficedula albicollis	54.45	1.00e-102	365.00
IUUC-Gmo-038692	Gadus morhua	52.74	1.00e-100	359.00
IUUC-Gga-040597	Gallus gallus	52.74	2.00e-101	362.00
IUUC-Gac-042004	Gasterosteus aculeatus	51.37	2.00e-95	342.00
IUUC-Gma-044322	Glycine max	61.38	0.00e+00	905.00
IUUC-Ggo-044761	Gorilla gorilla	54.45	2.00e-102	365.00
IUUC-Hsa-045698	Homo sapiens	54.45	1.00e-102	366.00
IUUC-Hvu-047781	Hordeum vulgare	47.20	0.00e+00	647.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	54.45	6.00e-103	367.00
IUUC-Lch-049674	Latimeria chalumnae	54.79	2.00e-105	375.00
IUUC-Lpe-051554	Leersia perrieri	71.05	0.00e+00	661.00
IUUC-Loc-052623	Lepisosteus oculatus	53.08	5.00e-97	347.00
IUUC-Laf-054587	Loxodonta africana	50.61	6.00e-103	367.00
IUUC-Mcc-055851	Macaca mulatta	54.45	2.00e-102	365.00
IUUC-Meu-056704	Macropus eugenii	55.14	1.00e-103	369.00
IUUC-Mtr-058053	Medicago truncatula	60.88	0.00e+00	890.00
IUUC-Mga-059608	Meleagris gallopavo	53.77	7.00e-102	363.00
IUUC-Mmr-061154	Microcebus murinus	54.45	2.00e-102	365.00
IUUC-Mdo-062365	Monodelphis domestica	54.79	2.00e-102	365.00
IUUC-Mmu-063754	Mus musculus	54.45	6.00e-103	367.00
IUUC-Mac-065100	Musa acuminata	65.61	0.00e+00	964.00
IUUC-Mpu-066245	Mustela putorius furo	54.45	7.00e-103	366.00
IUUC-Mlu-067692	Myotis lucifugus	54.45	3.00e-102	365.00
IUUC-Nle-070051	Nomascus leucogenys	54.11	2.00e-101	362.00
IUUC-Opr-070855	Ochotona princeps	54.45	1.00e-102	365.00
IUUC-Ont-071883	Oreochromis niloticus	47.34	1.00e-96	346.00
IUUC-Oan-073293	Ornithorhynchus anatinus	55.14	2.00e-99	355.00
IUUC-Ocu-074644	Oryctolagus cuniculus	50.61	6.00e-103	367.00
IUUC-Oba-075448	Oryza barthii	91.64	1.00e-176	612.00
IUUC-Obr-076798	Oryza brachyantha	46.02	0.00e+00	684.00
IUUC-Ogl-077427	Oryza glaberrima	67.61	0.00e+00	663.00
IUUC-Ogu-079022	Oryza glumaepatula	66.58	3.00e-149	521.00
IUUC-Oin-079811	Oryza indica	67.47	0.00e+00	662.00
IUUC-Olo-080245	Oryza longistaminata	67.67	0.00e+00	666.00
IUUC-Ome-081239	Oryza meridionalis	67.36	0.00e+00	635.00
IUUC-Oni-082640	Oryza nivara	91.64	1.00e-176	612.00
IUUC-Opu-083748	Oryza punctata	66.39	0.00e+00	628.00
IUUC-Oru-084609	Oryza rufipogon	91.64	1.00e-176	612.00
IUUC-Osa-085988	Oryza sativa	59.36	3.00e-155	541.00
IUUC-Ola-087483	Oryzias latipes	48.97	7.00e-92	330.00
IUUC-Oga-087964	Otolemur garnettii	54.45	1.00e-102	365.00
IUUC-Oar-089483	Ovis aries	54.11	1.00e-100	359.00
IUUC-Ptr-091387	Pan troglodytes	54.45	1.00e-102	365.00
IUUC-Pan-092623	Papio anubis	54.45	2.00e-102	365.00
IUUC-Psi-093830	Pelodiscus sinensis	53.82	2.00e-97	348.00
IUUC-Ppa-095379	Physcomitrella patens	85.71	2.00e-159	555.00
IUUC-Pfo-096755	Poecilia formosa	51.71	2.00e-96	345.00
IUUC-Pab-097564	Pongo abelii	54.45	6.00e-102	363.00
IUUC-Pop-099149	Populus trichocarpa	65.12	0.00e+00	1005.00
IUUC-Pca-100357	Procavia capensis	58.38	3.00e-74	271.00
IUUC-Ppe-101237	Prunus persica	65.00	0.00e+00	995.00
IUUC-Pva-102397	Pteropus vampyrus	50.00	5.00e-90	324.00
IUUC-Rno-105349	Rattus norvegicus	54.45	5.00e-103	367.00
IUUC-Smo-109379	Selaginella moellendorffii	72.19	1.00e-163	568.00
IUUC-Sit-110360	Setaria italica	69.44	0.00e+00	665.00
IUUC-Sly-111307	Solanum lycopersicum	60.91	0.00e+00	904.00
IUUC-Stu-112053	Solanum tuberosum	56.68	0.00e+00	860.00
IUUC-Sar-112953	Sorex araneus	47.81	2.00e-59	222.00
IUUC-Sbi-114389	Sorghum bicolor	60.19	3.00e-145	508.00
IUUC-Ssc-115949	Sus scrofa	48.15	3.00e-49	188.00
IUUC-Tgu-117461	Taeniopygia guttata	54.45	3.00e-103	367.00
IUUC-Tru-117865	Takifugu rubripes	49.66	5.00e-90	324.00
IUUC-Tsy-119036	Tarsius syrichta	61.40	3.00e-39	154.00
IUUC-Tni-120903	Tetraodon nigroviridis	49.49	4.00e-89	321.00
IUUC-Tca-121185	Theobroma cacao	59.67	0.00e+00	959.00
IUUC-Tae-125438	Triticum aestivum	73.38	8.00e-146	509.00
IUUC-Tur-126411	Triticum urartu	62.72	1.00e-154	539.00
IUUC-Ttr-128172	Tursiops truncatus	54.45	5.00e-103	367.00
IUUC-Vvi-131489	Vitis vinifera	67.04	0.00e+00	1045.00
IUUC-Xtr-132915	Xenopus tropicalis	49.55	9.00e-97	346.00
IUUC-Xma-134133	Xiphophorus maculatus	51.03	4.00e-94	337.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence