iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Csa-023090

Ensembl Protein ID

ENSCSAP00000018990.1

UniProt Accession

A0A0D9SDQ1; A0A0D9SDQ1_CHLSB

Genbank Protein ID

ENSCSAP00000018990

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AQIB01139489

Gene Name

TRIM56

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCSAG00000019486.1	ENSCSAT00000019576.1	ENSCSAP00000018990.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.20e-06	27.1	21	60

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iCle ++  p++lpC H++++dCl ++         ++rCP Cr
   Q: 21   CKICLEQLQA-PKTLPCLHTYCQDCLGQL-----ADGSRIRCPECR 60
           99******99.***************555.....388899*****8 PP

Organism

Chlorocebus sabaeus

Protein Sequence
(Fasta)

MVSHGSSPSL LEALSSDFLA CKICLEQLQA PKTLPCLHTY CQDCLGQLAD GSRIRCPECR 60
ETVPVPPEGV AAFKTNFFVN GLLDLVKARA CGDLRAGKPA CALCPLVGGT SAGGPATARC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTTTCCC ACGGGTCCTC GCCCTCCCTC CTAGAGGCCC TGAGCAGCGA CTTTCTGGCC 60
TGTAAAATCT GCCTGGAGCA GCTGCAGGCA CCCAAGACAC TGCCCTGCCT GCATACCTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR027370--Znf-RING_LisH
IPR000315--Znf_B-box
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50119--ZF_BBOX
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00643--zf-B_box
PF13445--zf-RING_UBOX

SMART

SM00336--BBOX
SM00184--RING

Gene Ontology

GO:0005622--C:intracellular
GO:0003723--F:RNA binding
GO:0008270--F:zinc ion binding

KEGG

csab:103246700

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001496	Ailuropoda melanoleuca	90.01	0.00e+00	1157.00
IUUC-Aca-004996	Anolis carolinensis	54.14	2.00e-75	277.00
IUUC-Bta-012368	Bos taurus	86.36	0.00e+00	1161.00
IUUC-Cja-019698	Callithrix jacchus	94.97	0.00e+00	1284.00
IUUC-Dno-030051	Dasypus novemcinctus	80.33	0.00e+00	986.00
IUUC-Ete-032312	Echinops telfairi	88.94	3.00e-94	337.00
IUUC-Eca-033253	Equus caballus	92.28	2.00e-106	378.00
IUUC-Eeu-034772	Erinaceus europaeus	81.16	2.00e-52	198.00
IUUC-Fca-036198	Felis catus	85.17	0.00e+00	925.00
IUUC-Ggo-045486	Gorilla gorilla	97.09	0.00e+00	1233.00
IUUC-Hsa-046238	Homo sapiens	97.09	0.00e+00	1231.00
IUUC-Itr-048481	Ictidomys tridecemlineatus	87.55	0.00e+00	1109.00
IUUC-Loc-052915	Lepisosteus oculatus	30.05	5.00e-68	252.00
IUUC-Laf-053640	Loxodonta africana	85.71	0.00e+00	1070.00
IUUC-Mcc-055540	Macaca mulatta	99.60	0.00e+00	1277.00
IUUC-Mmr-060840	Microcebus murinus	90.99	0.00e+00	1169.00
IUUC-Mmu-064375	Mus musculus	81.08	0.00e+00	1058.00
IUUC-Mpu-066797	Mustela putorius furo	88.46	0.00e+00	1141.00
IUUC-Mlu-067996	Myotis lucifugus	88.34	0.00e+00	1155.00
IUUC-Nle-069238	Nomascus leucogenys	97.79	2.00e-124	438.00
IUUC-Oga-089156	Otolemur garnettii	86.24	0.00e+00	1165.00
IUUC-Oar-090056	Ovis aries	81.53	0.00e+00	1028.00
IUUC-Ptr-090837	Pan troglodytes	96.72	0.00e+00	761.00
IUUC-Psi-093493	Pelodiscus sinensis	46.24	1.00e-59	224.00
IUUC-Pab-097607	Pongo abelii	97.35	0.00e+00	1266.00
IUUC-Pva-102758	Pteropus vampyrus	86.75	0.00e+00	1132.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence