iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl+ +  kd  + lp C+Hvfh +C+  w        ++ +CP+Cr
   Q: 100  CAVCLSLLeeKDNARMLPnCKHVFHVSCVDTW------LTTQSTCPVCR 142
           ******9977555999999*************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSSNNKTDDS DDRSFWQNST SYDASSKIFL VTTVSFSIII IIVFVYYLYA KFVLHRRSAF 60
QDLSFSVVSQ PPKRGLDSLV IASLPTFVVG IKNDVAGTEC AVCLSLLEEK DNARMLPNCK 120

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Nucleotide Sequence
(Fasta)

GTAAAGTCAA CAATTTCCTT CGAAAATTTA TGAGTATTCT GCTGCCTATT TTCTCACACC 60
CACCAATCAT ATTGTATGTC CCTTGAATCC AAGTAATAGC TATGAAGAAT AAACAAAAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT2G42350

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000564	Aegilops tauschii	50.00	2.00e-20	91.30
IUUC-Atr-003161	Amborella trichopoda	40.28	9.00e-24	102.00
IUUC-Aly-005545	Arabidopsis lyrata	88.07	4.00e-87	313.00
IUUC-Bol-015416	Brassica oleracea	68.78	5.00e-73	266.00
IUUC-Bra-017497	Brassica rapa	67.12	6.00e-72	262.00
IUUC-Cho-024278	Choloepus hoffmanni	50.00	4.00e-11	63.50
IUUC-Gma-044362	Glycine max	51.75	6.00e-28	116.00
IUUC-Lch-049512	Latimeria chalumnae	52.08	2.00e-11	63.90
IUUC-Mac-065470	Musa acuminata	41.22	7.00e-23	100.00
IUUC-Pma-094624	Petromyzon marinus	54.17	6.00e-12	65.90
IUUC-Tca-121159	Theobroma cacao	52.38	2.00e-26	111.00
IUUC-Ttr-128623	Tursiops truncatus	52.08	4.00e-11	63.50

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence