iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-016688

Ensembl Protein ID

Bra000371.1-P

UniProt Accession

M4C843; M4C843_BRARP

Protein Name

Ribosome biogenesis protein BOP1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra000371	Bra000371.1	Bra000371.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.80e-13	50.1	405	443

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gHt++vt+++   s+  ++sGs Dg++++W++ tg++lk
   Q: 405  GHTGPVTSISTecSGQWIASGSTDGSVRIWEVETGRCLK 443
           8********99976699********************97 PP

Organism

Brassica rapa

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MTKKSQGANE DQVKEPMRKI VPLKSQKEAK EVKSSKEEED LLLDSGTDSD YDGDSLSGSL 60
NSDDFDSDIF DSEDDFDSHR ETQDDSGHDG SDEVIDSENG EEEDGSDDEG SEQREVAEES 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACGAAGA AGAGCCAAGG AGCTAACGAA GACCAAGTGA AAGAACCCAT GAGAAAAATC 60
GTCCCTTTAA AATCTCAGAA AGAAGCAAAG GAAGTGAAAA GCTCCAAAGA GGAAGAAGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0007276--P:gamete generation
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0051302--P:regulation of cell division

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007625	Arabidopsis thaliana	79.00	0.00e+00	1127.00
IUUC-Bol-016405	Brassica oleracea	99.04	0.00e+00	1229.00
IUUC-Opr-071084	Ochotona princeps	42.60	3.00e-60	225.00
IUUC-Ome-081716	Oryza meridionalis	53.85	3.00e-179	621.00
IUUC-Oar-090058	Ovis aries	35.25	4.00e-55	208.00
IUUC-Ptr-090631	Pan troglodytes	42.35	1.00e-62	233.00
IUUC-Ppa-095528	Physcomitrella patens	56.24	2.00e-148	518.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence