iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Oba-075448

Ensembl Protein ID

OBART04G29700.1

UniProt Accession

A0A0D3G1Q9; A0A0D3G1Q9_9ORYZ

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OBART04G29700	OBART04G29700.1	OBART04G29700.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.80e-37	124.8	143	181
UBD/Beta-Prp	7.60e-58	197.0	15	276

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+++k+WDl+ g+ll+
   Q: 143  GHTRGVNAIRFtPDgRWVVSGGEDNVVKLWDLTAGKLLH 181
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvls 99
            +h+s ++c+k+  + +++l+tg++d+++ +w + +++ + slsgh+++v +v+f++++ + + g+  +tik+wdl+  k+v+tl+gh ++ +s
   Q: 15   VAHSSNVNCLKIgRKTSRVLVTGGDDHKVNLWAIGKPNSILSLSGHTSAVESVNFDSTEVFVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMS 108
           579999999***999********************************************9999******************************* PP
   S: 100  lsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngk 193
           ++f+p g++++sGs d  +++wd++ + c++ t +gh++ vn +++ pdg+ +vsG+ D++v+lWdl  gkll++++  h++++++++f++  +
   Q: 109  VDFHPFGEFFASGSLDTNLKIWDIRRKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNVVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEF 200
           *******************************.********************************************98.*************** PP
   S: 194  elvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisv 270
            l++gs d+tvk+wdl+t e + +    t+ v+s+ f p++  l++g  ++s++++  +   +  t+    s+++  
   Q: 201  LLATGSSDKTVKFWDLETFELIGSTGPETTGVRSMTFNPDGRSLLCG-LHESLKVFSWEPIRCHDTVDVGWSRLSDL 276
           **************************************999999999.57888886656666666665555555554 PP

Organism

Oryza barthii

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTNTKRAYK LQEFVAHSSN VNCLKIGRKT SRVLVTGGDD HKVNLWAIGK PNSILSLSGH 60
TSAVESVNFD STEVFVAAGA ASGTIKLWDL EEAKIVRTLT GHRSNCMSVD FHPFGEFFAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACGACCA ACACCAAGCG CGCCTACAAG CTCCGTATCC TCGCGAATTC GTTTCCAGTA 60
TTTTTGACTA GTATTTTTTG TATTTTTTTT CGAGGTACAT TGTGTCTGTT TGACCGATCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	58.11	0.00e+00	1008.00
IUUC-Aml-002187	Ailuropoda melanoleuca	54.18	1.00e-103	369.00
IUUC-Atr-002899	Amborella trichopoda	66.88	8.00e-177	613.00
IUUC-Apl-003305	Anas platyrhynchos	52.29	2.00e-103	369.00
IUUC-Aca-004635	Anolis carolinensis	51.62	1.00e-91	330.00
IUUC-Aly-005711	Arabidopsis lyrata	49.10	0.00e+00	730.00
IUUC-Ath-007323	Arabidopsis thaliana	49.89	0.00e+00	753.00
IUUC-Acl-008307	Aspergillus clavatus	32.82	1.00e-30	127.00
IUUC-Bgr-012225	Blumeria graminis	30.87	1.00e-28	120.00
IUUC-Bta-012527	Bos taurus	54.85	1.00e-106	379.00
IUUC-Bdi-014652	Brachypodium distachyon	68.91	0.00e+00	1232.00
IUUC-Bol-016374	Brassica oleracea	49.38	0.00e+00	731.00
IUUC-Bra-017390	Brassica rapa	82.50	1.00e-168	586.00
IUUC-Cja-019706	Callithrix jacchus	54.85	6.00e-106	377.00
IUUC-Cfa-020139	Canis familiaris	46.76	4.00e-99	354.00
IUUC-Cpo-021710	Cavia porcellus	55.18	3.00e-107	382.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	43.43	5.00e-85	308.00
IUUC-Csa-023546	Chlorocebus sabaeus	54.67	2.00e-102	366.00
IUUC-Cin-025156	Ciona intestinalis	46.51	1.00e-88	320.00
IUUC-Csv-025962	Ciona savignyi	49.66	3.00e-89	320.00
IUUC-Dre-028215	Danio rerio	51.97	3.00e-103	368.00
IUUC-Dno-029314	Dasypus novemcinctus	55.18	4.00e-106	378.00
IUUC-Dor-030482	Dipodomys ordii	54.85	6.00e-107	380.00
IUUC-Dme-032188	Drosophila melanogaster	36.78	8.00e-58	218.00
IUUC-Eca-034143	Equus caballus	53.35	7.00e-104	370.00
IUUC-Fca-035924	Felis catus	55.18	1.00e-106	380.00
IUUC-Fal-037387	Ficedula albicollis	53.47	4.00e-106	378.00
IUUC-Gmo-038692	Gadus morhua	52.33	7.00e-103	367.00
IUUC-Gga-040597	Gallus gallus	53.55	2.00e-106	379.00
IUUC-Gac-042004	Gasterosteus aculeatus	52.30	2.00e-99	356.00
IUUC-Gma-044134	Glycine max	53.83	0.00e+00	836.00
IUUC-Ggo-044761	Gorilla gorilla	54.85	4.00e-106	378.00
IUUC-Hsa-045698	Homo sapiens	54.85	3.00e-106	378.00
IUUC-Hvu-047649	Hordeum vulgare	68.66	0.00e+00	1232.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	54.85	9.00e-107	380.00
IUUC-Lch-049674	Latimeria chalumnae	51.07	2.00e-108	385.00
IUUC-Lpe-051554	Leersia perrieri	72.68	0.00e+00	1336.00
IUUC-Loc-052623	Lepisosteus oculatus	53.33	2.00e-100	359.00
IUUC-Laf-054587	Loxodonta africana	54.85	1.00e-106	379.00
IUUC-Mcc-055851	Macaca mulatta	54.85	4.00e-106	378.00
IUUC-Meu-056704	Macropus eugenii	54.85	3.00e-106	379.00
IUUC-Mtr-058053	Medicago truncatula	52.50	0.00e+00	801.00
IUUC-Mga-059608	Meleagris gallopavo	52.12	2.00e-103	369.00
IUUC-Mmr-061154	Microcebus murinus	54.85	2.00e-106	379.00
IUUC-Mdo-062365	Monodelphis domestica	51.47	2.00e-106	379.00
IUUC-Mmu-063754	Mus musculus	51.03	4.00e-107	381.00
IUUC-Mac-064667	Musa acuminata	81.38	2.00e-176	611.00
IUUC-Mpu-066245	Mustela putorius furo	55.52	7.00e-107	380.00
IUUC-Mlu-067692	Myotis lucifugus	54.70	2.00e-105	375.00
IUUC-Nle-070051	Nomascus leucogenys	54.52	5.00e-105	374.00
IUUC-Opr-070855	Ochotona princeps	53.04	4.00e-106	378.00
IUUC-Ont-071883	Oreochromis niloticus	51.16	3.00e-99	355.00
IUUC-Oan-073293	Ornithorhynchus anatinus	55.16	2.00e-102	366.00
IUUC-Ocu-074644	Oryctolagus cuniculus	54.85	7.00e-107	380.00
IUUC-Obr-076385	Oryza brachyantha	67.78	0.00e+00	1018.00
IUUC-Ogl-077427	Oryza glaberrima	76.92	0.00e+00	1407.00
IUUC-Ogu-078428	Oryza glumaepatula	99.48	0.00e+00	1488.00
IUUC-Oin-079811	Oryza indica	75.75	0.00e+00	1394.00
IUUC-Olo-080245	Oryza longistaminata	71.59	0.00e+00	1283.00
IUUC-Ome-081239	Oryza meridionalis	95.40	0.00e+00	1635.00
IUUC-Oni-082640	Oryza nivara	100.00	0.00e+00	1712.00
IUUC-Opu-083748	Oryza punctata	96.15	0.00e+00	1689.00
IUUC-Oru-084609	Oryza rufipogon	100.00	0.00e+00	1712.00
IUUC-Osa-085988	Oryza sativa	92.60	0.00e+00	1579.00
IUUC-Ola-087483	Oryzias latipes	48.87	6.00e-95	341.00
IUUC-Oga-087964	Otolemur garnettii	54.25	1.00e-106	379.00
IUUC-Oar-089483	Ovis aries	54.52	1.00e-104	372.00
IUUC-Ptr-091387	Pan troglodytes	54.85	4.00e-106	378.00
IUUC-Pan-092623	Papio anubis	54.85	4.00e-106	378.00
IUUC-Psi-093830	Pelodiscus sinensis	54.45	1.00e-100	360.00
IUUC-Ppa-095379	Physcomitrella patens	83.16	2.00e-156	545.00
IUUC-Pfo-096755	Poecilia formosa	50.99	6.00e-99	354.00
IUUC-Pab-097564	Pongo abelii	54.85	1.00e-105	376.00
IUUC-Pop-099149	Populus trichocarpa	54.11	0.00e+00	866.00
IUUC-Pca-100357	Procavia capensis	58.82	8.00e-78	283.00
IUUC-Ppe-101237	Prunus persica	67.16	0.00e+00	632.00
IUUC-Pva-102397	Pteropus vampyrus	50.50	1.00e-93	337.00
IUUC-Rno-105349	Rattus norvegicus	51.03	2.00e-107	382.00
IUUC-Smo-109409	Selaginella moellendorffii	79.08	3.00e-159	555.00
IUUC-Sit-110360	Setaria italica	70.99	0.00e+00	1234.00
IUUC-Sly-111307	Solanum lycopersicum	52.79	0.00e+00	823.00
IUUC-Stu-112462	Solanum tuberosum	56.89	5.00e-169	587.00
IUUC-Sar-112953	Sorex araneus	46.05	4.00e-58	218.00
IUUC-Ssc-115949	Sus scrofa	48.77	1.00e-49	190.00
IUUC-Tgu-117461	Taeniopygia guttata	53.47	1.00e-106	379.00
IUUC-Tru-117865	Takifugu rubripes	50.00	4.00e-93	335.00
IUUC-Tsy-119036	Tarsius syrichta	61.16	1.00e-41	163.00
IUUC-Tni-120903	Tetraodon nigroviridis	46.97	8.00e-92	330.00
IUUC-Tca-121185	Theobroma cacao	54.26	0.00e+00	887.00
IUUC-Tae-125263	Triticum aestivum	68.98	0.00e+00	1238.00
IUUC-Tur-126411	Triticum urartu	58.57	0.00e+00	991.00
IUUC-Tme-127031	Tuber melanosporum	30.58	3.00e-29	122.00
IUUC-Ttr-128172	Tursiops truncatus	54.85	9.00e-107	380.00
IUUC-Vvi-131489	Vitis vinifera	55.28	0.00e+00	867.00
IUUC-Xtr-132915	Xenopus tropicalis	49.85	1.00e-101	363.00
IUUC-Xma-134133	Xiphophorus maculatus	50.66	1.00e-96	346.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence