iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111307

Ensembl Protein ID

Solyc02g021360.2.1

UniProt Accession

K4B4Y6; K4B4Y6_SOLLC

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc02g021360.2	Solyc02g021360.2.1	Solyc02g021360.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.30e-36	122.1	142	180
UBD/Beta-Prp	2.50e-58	198.4	15	256

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+ +v++++f +d + +vsG+ D+t+k+WDl+ g+ll+
   Q: 142  GHSRGVNAIRFtPDgRWVVSGGEDNTVKLWDLTAGKLLH 180
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsv 97
           +h+  ++c+k+  +++++l+tg++d+++ +w + +++++ slsgh++++ +v+f++++ + + g+  +tik+wdl+  k+v+tl+gh ++ 
   Q: 15   AHSLSVNCLKIgRKSSRVLLTGGEDHKVNLWAIGKPNAILSLSGHSSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNC 105
           7899999****99*********************************************999999999************************ PP
   S: 98   lslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsf 188
            sl+f+p g++++sGs d  +++wd++ + c++ t +gh++ vn +++ pdg+ +vsG+ D+tv+lWdl  gkll++++  h++++++++f
   Q: 106  ISLDFHPFGEFFASGSLDTNLKIWDIRRKGCIH-TYKGHSRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDF 194
           *********************************.********************************************98.********** PP
   S: 189  dsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiri..W 249
           ++  + l++gs d+tvk+wdl+t e + +    t+ v+++ f p++  l++g  ++s+++  W
   Q: 195  HPHEFLLATGSADRTVKFWDLETFELIGSSGPETSGVRCMTFNPDGRTLLCGL-HESLKVcsW 256
           *******************************************9999999995.666666445 PP

Organism

Solanum lycopersicum

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTTKRAYKL QEFVAHSLSV NCLKIGRKSS RVLLTGGEDH KVNLWAIGKP NAILSLSGHS 60
SGIDSVSFDS SEVLVAAGAA SGTIKLWDLE EAKIVRTLTG HRSNCISLDF HPFGEFFASG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTCTCTTTG TATTTGGCCA TCGTTATTCA GGCTGAGAAG ACGAAGCTAT CAGAACGTAT 60
TGGAGCTACA ATTGAGTAGA GCAATGAAGA GCCATTGTTG CTAAACAAAT TCGTTTGTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

sly:101258313

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000873	Aegilops tauschii	41.58	2.00e-160	558.00
IUUC-Aml-002187	Ailuropoda melanoleuca	51.83	1.00e-99	357.00
IUUC-Atr-002899	Amborella trichopoda	60.91	0.00e+00	923.00
IUUC-Apl-003305	Anas platyrhynchos	52.54	3.00e-101	362.00
IUUC-Aca-004635	Anolis carolinensis	52.71	6.00e-92	330.00
IUUC-Aly-005711	Arabidopsis lyrata	58.22	0.00e+00	889.00
IUUC-Ath-007606	Arabidopsis thaliana	58.09	0.00e+00	889.00
IUUC-Bta-012527	Bos taurus	53.18	1.00e-102	366.00
IUUC-Bdi-014652	Brachypodium distachyon	68.07	0.00e+00	680.00
IUUC-Bol-016374	Brassica oleracea	57.45	0.00e+00	885.00
IUUC-Bra-017390	Brassica rapa	55.00	0.00e+00	846.00
IUUC-Cja-019706	Callithrix jacchus	52.82	3.00e-102	365.00
IUUC-Cfa-020139	Canis familiaris	45.07	2.00e-94	338.00
IUUC-Cpo-021710	Cavia porcellus	53.51	2.00e-103	369.00
IUUC-Csa-023546	Chlorocebus sabaeus	53.26	3.00e-99	355.00
IUUC-Cin-025156	Ciona intestinalis	46.15	9.00e-86	310.00
IUUC-Csv-025962	Ciona savignyi	49.32	5.00e-86	310.00
IUUC-Dre-028215	Danio rerio	52.82	1.00e-101	363.00
IUUC-Dno-029314	Dasypus novemcinctus	52.84	5.00e-102	364.00
IUUC-Dor-030482	Dipodomys ordii	53.18	6.00e-103	367.00
IUUC-Dme-032188	Drosophila melanogaster	36.54	2.00e-56	213.00
IUUC-Eca-034143	Equus caballus	52.49	1.00e-99	356.00
IUUC-Fca-035924	Felis catus	52.49	2.00e-102	365.00
IUUC-Fal-037387	Ficedula albicollis	53.67	2.00e-104	372.00
IUUC-Gmo-038692	Gadus morhua	51.56	1.00e-103	370.00
IUUC-Gga-040597	Gallus gallus	51.84	2.00e-102	365.00
IUUC-Gac-042004	Gasterosteus aculeatus	51.50	2.00e-97	349.00
IUUC-Gma-044134	Glycine max	65.17	0.00e+00	956.00
IUUC-Ggo-044761	Gorilla gorilla	52.82	2.00e-102	365.00
IUUC-Hsa-045698	Homo sapiens	52.82	2.00e-102	366.00
IUUC-Hvu-047649	Hordeum vulgare	70.26	0.00e+00	672.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	53.18	8.00e-103	367.00
IUUC-Lch-049674	Latimeria chalumnae	53.33	2.00e-105	375.00
IUUC-Lpe-051554	Leersia perrieri	71.52	0.00e+00	690.00
IUUC-Loc-052623	Lepisosteus oculatus	50.30	2.00e-100	358.00
IUUC-Laf-054587	Loxodonta africana	52.49	7.00e-102	363.00
IUUC-Mcc-055851	Macaca mulatta	52.82	2.00e-102	365.00
IUUC-Meu-056704	Macropus eugenii	52.49	2.00e-102	365.00
IUUC-Mtr-058053	Medicago truncatula	63.72	0.00e+00	961.00
IUUC-Mga-059608	Meleagris gallopavo	51.69	3.00e-100	358.00
IUUC-Mmr-061154	Microcebus murinus	53.18	2.00e-102	365.00
IUUC-Mdo-062365	Monodelphis domestica	52.51	2.00e-101	362.00
IUUC-Mmu-063754	Mus musculus	53.18	6.00e-103	367.00
IUUC-Mac-065100	Musa acuminata	59.68	0.00e+00	891.00
IUUC-Mpu-066245	Mustela putorius furo	52.16	5.00e-102	364.00
IUUC-Mlu-067692	Myotis lucifugus	53.02	1.00e-101	362.00
IUUC-Nle-070051	Nomascus leucogenys	52.49	3.00e-101	362.00
IUUC-Opr-070855	Ochotona princeps	52.84	9.00e-102	363.00
IUUC-Ont-071883	Oreochromis niloticus	51.66	3.00e-99	355.00
IUUC-Oan-073293	Ornithorhynchus anatinus	50.15	7.00e-99	353.00
IUUC-Ocu-074644	Oryctolagus cuniculus	53.18	6.00e-103	367.00
IUUC-Oba-075448	Oryza barthii	52.90	0.00e+00	832.00
IUUC-Obr-076385	Oryza brachyantha	72.85	0.00e+00	690.00
IUUC-Ogl-077427	Oryza glaberrima	72.63	0.00e+00	689.00
IUUC-Ogu-078428	Oryza glumaepatula	48.32	0.00e+00	645.00
IUUC-Oin-079811	Oryza indica	70.54	0.00e+00	677.00
IUUC-Olo-080245	Oryza longistaminata	70.75	0.00e+00	681.00
IUUC-Ome-081239	Oryza meridionalis	68.62	0.00e+00	637.00
IUUC-Oni-082640	Oryza nivara	52.90	0.00e+00	832.00
IUUC-Opu-083637	Oryza punctata	46.07	0.00e+00	694.00
IUUC-Oru-084609	Oryza rufipogon	52.90	0.00e+00	832.00
IUUC-Osa-085988	Oryza sativa	63.58	4.00e-163	567.00
IUUC-Ola-087483	Oryzias latipes	48.00	2.00e-92	332.00
IUUC-Oga-087964	Otolemur garnettii	53.18	1.00e-102	366.00
IUUC-Oar-089483	Ovis aries	52.84	1.00e-100	360.00
IUUC-Ptr-091387	Pan troglodytes	52.82	1.00e-102	366.00
IUUC-Pan-092623	Papio anubis	52.82	2.00e-102	365.00
IUUC-Psi-093830	Pelodiscus sinensis	53.74	4.00e-99	355.00
IUUC-Ppa-095379	Physcomitrella patens	80.13	1.00e-153	536.00
IUUC-Pfo-096755	Poecilia formosa	51.66	3.00e-100	358.00
IUUC-Pab-097564	Pongo abelii	52.82	5.00e-102	364.00
IUUC-Pop-099149	Populus trichocarpa	67.21	0.00e+00	1054.00
IUUC-Pca-100357	Procavia capensis	57.84	2.00e-76	279.00
IUUC-Ppe-101237	Prunus persica	70.49	0.00e+00	1091.00
IUUC-Pva-102397	Pteropus vampyrus	48.83	7.00e-90	324.00
IUUC-Rno-105349	Rattus norvegicus	53.18	7.00e-103	367.00
IUUC-Smo-109409	Selaginella moellendorffii	59.87	2.00e-163	568.00
IUUC-Sit-110360	Setaria italica	72.47	0.00e+00	700.00
IUUC-Sar-112953	Sorex araneus	46.05	4.00e-57	214.00
IUUC-Ssc-115949	Sus scrofa	47.53	5.00e-48	184.00
IUUC-Tgu-117461	Taeniopygia guttata	53.67	6.00e-105	374.00
IUUC-Tru-117865	Takifugu rubripes	49.50	1.00e-92	333.00
IUUC-Tsy-119036	Tarsius syrichta	58.68	1.00e-39	156.00
IUUC-Tni-120903	Tetraodon nigroviridis	49.67	3.00e-92	332.00
IUUC-Tca-121185	Theobroma cacao	64.64	0.00e+00	1067.00
IUUC-Tae-125263	Triticum aestivum	71.40	0.00e+00	671.00
IUUC-Tur-126411	Triticum urartu	57.40	8.00e-158	550.00
IUUC-Ttr-128172	Tursiops truncatus	52.82	7.00e-103	367.00
IUUC-Vvi-131489	Vitis vinifera	71.27	0.00e+00	1109.00
IUUC-Xtr-132915	Xenopus tropicalis	51.97	8.00e-99	353.00
IUUC-Xma-134133	Xiphophorus maculatus	50.99	7.00e-98	350.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence