iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein 3D Structure
PDB	MMDB
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	3.30e-16	60.1	127	223

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 4    vkvsykgeirsfaldlekpgkfedLlkavrt.lt.......................elknsevalkYeDedGDlvtlksDedldkavsllaskksll 77
           vkvs++g+++++++dl+ + +++dL +a+++ +                         l+ se+ + YeD+dGD++ l++D++++++v+      s++
   Q: 127  VKVSMDGAPYLRKVDLKMYKSYQDLSDALAKmFSsftmgnygaqgmidfmnesklmnLLNSSEYVPSYEDKDGDWM-LVGDVPWEMFVE------SCK 217
           9******************************622566999**************9977788***************.************......*** PP
   S: 78   rlliqk 83
           rl+i+k
   Q: 218  RLRIMK 223
           *****8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Protein Sequence
(Fasta)

MIGQLMNLKA TELCLGLPGG AEAVESPAKS AVGSKRGFSE TVDLMLNLQS NKEGSVDLKN 60
VSAVPKEKTT LKDPSKPPAK AQVVGWPPVR NYRKNMMTQQ KTSSGAEEAS SEKAGNFGGG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGAAGAAAAA AGAGCAAAAG ACATGCACAT GCAATTACAC GAATACATAC ACCCCACCAC 60
CATCCTCCCT CCTTATATTA TTATTGCCCC TTCCTCTCCT TTCTTCTTCC CCTCTTACCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0002--3D-structure
KW-0025--Alternative splicing
KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0009734--P:auxin-activated signaling pathway
GO:0009630--P:gravitropism
GO:0009733--P:response to auxin
GO:0009753--P:response to jasmonic acid
GO:0009414--P:response to water deprivation
GO:0009611--P:response to wounding
GO:0006351--P:transcription, DNA-templated

KEGG

ath:AT3G23050

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000264	Aegilops tauschii	62.58	1.00e-48	184.00
IUUC-Aly-005642	Arabidopsis lyrata	95.87	4.00e-120	422.00
IUUC-Bol-015767	Brassica oleracea	83.54	1.00e-113	400.00
IUUC-Bra-017555	Brassica rapa	83.95	5.00e-114	402.00
IUUC-Gma-043505	Glycine max	75.52	7.00e-98	348.00
IUUC-Oba-075945	Oryza barthii	70.45	5.00e-63	233.00
IUUC-Oin-079136	Oryza indica	69.89	7.00e-63	233.00
IUUC-Ome-081785	Oryza meridionalis	59.64	3.00e-46	177.00
IUUC-Oni-082674	Oryza nivara	70.45	5.00e-63	233.00
IUUC-Opu-083338	Oryza punctata	60.37	4.00e-46	177.00
IUUC-Oru-084731	Oryza rufipogon	60.37	8.00e-46	176.00
IUUC-Osa-086164	Oryza sativa	69.89	7.00e-63	233.00
IUUC-Ppa-095740	Physcomitrella patens	46.30	5.00e-33	134.00
IUUC-Pop-099950	Populus trichocarpa	70.97	3.00e-93	333.00
IUUC-Ppe-101719	Prunus persica	70.00	6.00e-85	305.00
IUUC-Sly-111331	Solanum lycopersicum	68.20	1.00e-80	291.00
IUUC-Stu-112437	Solanum tuberosum	64.54	4.00e-82	296.00
IUUC-Tca-121826	Theobroma cacao	71.71	1.00e-90	325.00
IUUC-Tre-122196	Trichoderma reesei	36.54	3.10e-01	29.60
IUUC-Ttr-128931	Tursiops truncatus	31.03	1.70e-01	30.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence