iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Gga-041182

Ensembl Protein ID

ENSGALP00000056474.1

UniProt Accession

A0A1D5PU72; A0A1D5PU72_CHICK

Genbank Protein ID

ENSGALP00000056474

Protein Name

V(D)J recombination-activating protein 1

Genbank Nucleotide ID

AADN04000062

Gene Name

RAG1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSGALG00000007938.5	ENSGALT00000012896.5	ENSGALP00000056474.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	76.14	0.00e+00	1622.00	IUUC-Hsa-045964
E3 activity/RING/RING	74.54	0.00e+00	1598.00	IUUC-Mmu-064297

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Gallus gallus

Protein Sequence
(Fasta)

MSITSRMDLP EEIQHPYAKF SEWKFKLFKV RPFQKEPSDK SQCINKDQEQ EVASTDKNIT 60
LHKDEEVPRG EKLILTQKDF MGNTQALEKD VNDMKIQDNT AHQNNLKQLC RICGVSFKTD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCGATAA CATCACGAAT GGACCTTCCT GAAGAGATTC AGCATCCGTA CGCTAAATTT 60
TCTGAATGGA AATTCAAGCT GTTTAAAGTG AGGCCATTTC AAAAAGAACC TTCTGATAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0233--DNA recombination
KW-0238--DNA-binding
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR024627--RAG1
IPR019485--RAG1_Znf
IPR023336--RAG_nonamer-bd_dom
IPR013087--Znf_C2H2_type
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS51487--NBD
PS51765--ZF_RAG1
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF12940--RAG1
PF00097--zf-C3HC4
PF10426--zf-RAG1

Gene Ontology

GO:0005634--C:nucleus
GO:0004519--F:endonuclease activity
GO:0043565--F:sequence-specific DNA binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0033151--P:V(D)J recombination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001206	Ailuropoda melanoleuca	76.00	0.00e+00	1631.00
IUUC-Apl-003271	Anas platyrhynchos	92.99	0.00e+00	2022.00
IUUC-Aca-004400	Anolis carolinensis	75.73	0.00e+00	1652.00
IUUC-Ame-011295	Astyanax mexicanus	59.42	0.00e+00	1222.00
IUUC-Bta-012421	Bos taurus	76.25	0.00e+00	1628.00
IUUC-Cja-019891	Callithrix jacchus	75.17	0.00e+00	1590.00
IUUC-Cfa-020740	Canis familiaris	70.23	0.00e+00	1526.00
IUUC-Cpo-021800	Cavia porcellus	75.19	0.00e+00	1558.00
IUUC-Csa-024203	Chlorocebus sabaeus	74.49	0.00e+00	1409.00
IUUC-Dre-028416	Danio rerio	59.32	0.00e+00	1215.00
IUUC-Dno-029101	Dasypus novemcinctus	75.63	0.00e+00	1601.00
IUUC-Eca-033385	Equus caballus	75.90	0.00e+00	1627.00
IUUC-Fca-036545	Felis catus	75.53	0.00e+00	1608.00
IUUC-Fal-037208	Ficedula albicollis	88.20	0.00e+00	1925.00
IUUC-Gmo-039622	Gadus morhua	54.44	0.00e+00	1148.00
IUUC-Gac-041682	Gasterosteus aculeatus	57.63	0.00e+00	1199.00
IUUC-Ggo-044510	Gorilla gorilla	76.23	0.00e+00	1621.00
IUUC-Hsa-045964	Homo sapiens	76.14	0.00e+00	1618.00
IUUC-Itr-048862	Ictidomys tridecemlineatus	76.14	0.00e+00	1609.00
IUUC-Lch-050041	Latimeria chalumnae	68.36	0.00e+00	1448.00
IUUC-Loc-052464	Lepisosteus oculatus	65.14	0.00e+00	1370.00
IUUC-Laf-053544	Loxodonta africana	76.23	0.00e+00	1616.00
IUUC-Mcc-054867	Macaca mulatta	75.94	0.00e+00	1608.00
IUUC-Meu-055986	Macropus eugenii	74.57	0.00e+00	1463.00
IUUC-Mga-059262	Meleagris gallopavo	97.41	0.00e+00	2061.00
IUUC-Mdo-062686	Monodelphis domestica	74.81	0.00e+00	1632.00
IUUC-Mmu-064297	Mus musculus	74.54	0.00e+00	1625.00
IUUC-Mpu-066027	Mustela putorius furo	75.63	0.00e+00	1599.00
IUUC-Mlu-067885	Myotis lucifugus	76.62	0.00e+00	1622.00
IUUC-Nle-070073	Nomascus leucogenys	75.94	0.00e+00	1611.00
IUUC-Ont-071400	Oreochromis niloticus	59.48	0.00e+00	1253.00
IUUC-Oan-072920	Ornithorhynchus anatinus	90.82	0.00e+00	756.00
IUUC-Ocu-074616	Oryctolagus cuniculus	75.67	0.00e+00	1594.00
IUUC-Ola-086828	Oryzias latipes	58.54	0.00e+00	1234.00
IUUC-Oga-088675	Otolemur garnettii	86.72	5.00e-145	506.00
IUUC-Oar-090380	Ovis aries	75.72	0.00e+00	1647.00
IUUC-Ptr-090648	Pan troglodytes	76.04	0.00e+00	1615.00
IUUC-Pan-092036	Papio anubis	75.75	0.00e+00	1607.00
IUUC-Psi-093130	Pelodiscus sinensis	83.66	0.00e+00	1840.00
IUUC-Pfo-097273	Poecilia formosa	59.60	0.00e+00	1230.00
IUUC-Pca-100134	Procavia capensis	71.43	0.00e+00	1499.00
IUUC-Rno-105632	Rattus norvegicus	74.95	0.00e+00	1624.00
IUUC-Sha-107238	Sarcophilus harrisii	74.78	0.00e+00	1632.00
IUUC-Sar-113591	Sorex araneus	66.57	0.00e+00	1399.00
IUUC-Ssc-115720	Sus scrofa	76.23	0.00e+00	1615.00
IUUC-Tgu-117030	Taeniopygia guttata	88.53	0.00e+00	1917.00
IUUC-Tru-117669	Takifugu rubripes	57.13	0.00e+00	1147.00
IUUC-Tsy-119578	Tarsius syrichta	73.65	0.00e+00	1572.00
IUUC-Tni-120073	Tetraodon nigroviridis	56.39	0.00e+00	1190.00
IUUC-Tbe-128029	Tupaia belangeri	64.98	0.00e+00	742.00
IUUC-Ttr-128677	Tursiops truncatus	84.58	0.00e+00	736.00
IUUC-Vpa-130346	Vicugna pacos	87.33	0.00e+00	827.00
IUUC-Xtr-132442	Xenopus tropicalis	88.14	9.00e-101	358.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence