iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Fal-037507

Ensembl Protein ID

ENSFALP00000012711.1

UniProt Accession

U3KCF7; U3KCF7_FICAL

Genbank Protein ID

ENSFALP00000012711

Protein Name

E3 ubiquitin-protein ligase parkin

Genbank Nucleotide ID

AGTO01000394

Gene Name

PARK2

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSFALG00000012173.1	ENSFALT00000012761.1	ENSFALP00000012711.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_PIM	1.70e-22	78.8	1	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_PIM

   S: 3    ltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           ++v++++++ f++ev  d+++ +lKe++a+++gvp++q+++I+aG++L++d tL+++++ ++s+vh+v+++++
   Q: 1    VFVRFNSSHGFPVEVGLDSSILQLKEAVAQRQGVPADQLRVIFAGRELSNDLTLQNCDLAQQSIVHIVQSPQN 73
           789**99999***********************************************************9987 PP

Organism

Ficedula albicollis

Functional Description
(View)

Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.

Protein Sequence
(Fasta)

VFVRFNSSHG FPVEVGLDSS ILQLKEAVAQ RQGVPADQLR VIFAGRELSN DLTLQNCDLA 60
QQSIVHIVQS PQNSQNKEKT EDSCIGGVPK TLKREPESLT RIDLSTSILP SVSAGLAVIL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTATTCCCTG AGGGGGTTAA AAATACCACA CTGGAGTATT AATGGCTTTT CTCTGAAAAT 60
AGTAAATGCT TACTGTAATT GAAGAGTAAG CCTCTTGCCA TCATTCTAGT ATAAACATGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR016150--Casein_kin_II_reg-sub_b-sht
IPR031127--E3_UB_ligase_RBR
IPR002867--IBR_dom
IPR003977--Parkin
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50053--UBIQUITIN_2

Pfam

PF01485--IBR
PF00240--ubiquitin

PRINTS

PR01475--PARKIN

SMART

SM00647--IBR
SM00213--UBQ

Gene Ontology

GO:0016235--C:aggresome
GO:0005829--C:cytosol
GO:0005783--C:endoplasmic reticulum
GO:0005794--C:Golgi apparatus
GO:0071797--C:LUBAC complex
GO:0005739--C:mitochondrion
GO:0099073--C:mitochondrion-derived vesicle
GO:0043005--C:neuron projection
GO:0005634--C:nucleus
GO:1990452--C:Parkin-FBXW7-Cul1 ubiquitin ligase complex
GO:0048471--C:perinuclear region of cytoplasm
GO:0098793--C:presynapse
GO:0043234--C:protein complex
GO:0046872--F:metal ion binding
GO:0000976--F:transcription regulatory region sequence-specific DNA binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008344--P:adult locomotory behavior
GO:0070842--P:aggresome assembly
GO:0097237--P:cellular response to toxic substance
GO:0042417--P:dopamine metabolic process
GO:0051583--P:dopamine uptake involved in synaptic transmission
GO:0010994--P:free ubiquitin chain polymerization
GO:0007612--P:learning
GO:0000423--P:macromitophagy
GO:0099074--P:mitochondrion to lysosome transport
GO:0044828--P:negative regulation by host of viral genome replication
GO:0032232--P:negative regulation of actin filament bundle assembly
GO:0090090--P:negative regulation of canonical Wnt signaling pathway
GO:1903382--P:negative regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway
GO:1903542--P:negative regulation of exosomal secretion
GO:0033132--P:negative regulation of glucokinase activity
GO:0046676--P:negative regulation of insulin secretion
GO:1905366--P:negative regulation of intralumenal vesicle formation
GO:1902254--P:negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator
GO:1903377--P:negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway
GO:1902283--P:negative regulation of primary amine oxidase activity
GO:0001933--P:negative regulation of protein phosphorylation
GO:2000378--P:negative regulation of reactive oxygen species metabolic process
GO:0090201--P:negative regulation of release of cytochrome c from mitochondria
GO:1904049--P:negative regulation of spontaneous neurotransmitter secretion
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0042415--P:norepinephrine metabolic process
GO:0061734--P:parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
GO:1903861--P:positive regulation of dendrite extension
GO:0043388--P:positive regulation of DNA binding
GO:0043123--P:positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0010636--P:positive regulation of mitochondrial fusion
GO:0051582--P:positive regulation of neurotransmitter uptake
GO:1903378--P:positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway
GO:0032436--P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032092--P:positive regulation of protein binding
GO:1902530--P:positive regulation of protein linear polyubiquitination
GO:1905477--P:positive regulation of protein localization to membrane
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:1903265--P:positive regulation of tumor necrosis factor-mediated signaling pathway
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051865--P:protein autoubiquitination
GO:0031648--P:protein destabilization
GO:0070979--P:protein K11-linked ubiquitination
GO:0070936--P:protein K48-linked ubiquitination
GO:0085020--P:protein K6-linked ubiquitination
GO:0070534--P:protein K63-linked ubiquitination
GO:0070585--P:protein localization to mitochondrion
GO:0006513--P:protein monoubiquitination
GO:0050821--P:protein stabilization
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0042053--P:regulation of dopamine metabolic process
GO:0051881--P:regulation of mitochondrial membrane potential
GO:0034976--P:response to endoplasmic reticulum stress
GO:0001964--P:startle response
GO:0035249--P:synaptic transmission, glutamatergic

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001814	Ailuropoda melanoleuca	71.18	5.00e-117	413.00
IUUC-Apl-003304	Anas platyrhynchos	91.77	0.00e+00	637.00
IUUC-Aca-004908	Anolis carolinensis	78.70	2.00e-51	192.00
IUUC-Ame-011856	Astyanax mexicanus	65.94	0.00e+00	631.00
IUUC-Bta-013014	Bos taurus	71.83	2.00e-169	588.00
IUUC-Cel-018687	Caenorhabditis elegans	27.89	2.00e-43	169.00
IUUC-Cja-019274	Callithrix jacchus	68.73	4.00e-114	403.00
IUUC-Cfa-020461	Canis familiaris	69.55	2.00e-115	407.00
IUUC-Cpo-022251	Cavia porcellus	71.92	1.00e-118	419.00
IUUC-Csa-023112	Chlorocebus sabaeus	68.75	4.00e-107	380.00
IUUC-Cho-024504	Choloepus hoffmanni	55.31	7.00e-135	473.00
IUUC-Cgl-026479	Colletotrichum gloeosporioides	49.02	1.00e-10	61.20
IUUC-Dre-028202	Danio rerio	65.44	2.00e-171	595.00
IUUC-Dno-028946	Dasypus novemcinctus	84.62	5.00e-40	155.00
IUUC-Dor-030508	Dipodomys ordii	62.12	2.00e-119	421.00
IUUC-Dme-031980	Drosophila melanogaster	43.43	6.00e-107	380.00
IUUC-Ete-032281	Echinops telfairi	58.54	4.00e-75	275.00
IUUC-Eca-033228	Equus caballus	71.43	3.00e-118	417.00
IUUC-Gmo-038744	Gadus morhua	60.35	6.00e-95	340.00
IUUC-Ggr-039963	Gaeumannomyces graminis	47.06	6.00e-09	55.10
IUUC-Gga-040353	Gallus gallus	87.45	0.00e+00	820.00
IUUC-Gac-042519	Gasterosteus aculeatus	50.75	1.00e-134	473.00
IUUC-Hsa-046016	Homo sapiens	72.94	0.00e+00	685.00
IUUC-Itr-048744	Ictidomys tridecemlineatus	71.83	0.00e+00	668.00
IUUC-Loc-052389	Lepisosteus oculatus	66.88	3.00e-177	613.00
IUUC-Laf-053412	Loxodonta africana	52.13	9.00e-18	80.90
IUUC-Mcc-054933	Macaca mulatta	72.73	0.00e+00	681.00
IUUC-Meu-055963	Macropus eugenii	60.44	2.00e-132	464.00
IUUC-Mpo-057509	Magnaporthe poae	40.54	1.00e-11	63.50
IUUC-Mga-059626	Meleagris gallopavo	86.67	2.00e-35	139.00
IUUC-Mmr-061566	Microcebus murinus	80.82	2.00e-90	324.00
IUUC-Mdo-061952	Monodelphis domestica	89.66	2.00e-30	122.00
IUUC-Mmu-063561	Mus musculus	70.97	0.00e+00	694.00
IUUC-Mpu-065799	Mustela putorius furo	68.37	1.00e-114	405.00
IUUC-Mlu-068134	Myotis lucifugus	68.80	3.00e-138	484.00
IUUC-Ncr-068949	Neurospora crassa	32.56	8.00e-12	62.00
IUUC-Nle-070078	Nomascus leucogenys	68.56	1.00e-117	415.00
IUUC-Opr-070541	Ochotona princeps	70.75	0.00e+00	640.00
IUUC-Ont-071743	Oreochromis niloticus	51.74	4.00e-138	484.00
IUUC-Oan-073700	Ornithorhynchus anatinus	79.63	9.00e-22	94.00
IUUC-Ola-086426	Oryzias latipes	60.92	8.00e-63	232.00
IUUC-Oga-088867	Otolemur garnettii	72.75	0.00e+00	678.00
IUUC-Oar-089365	Ovis aries	70.72	1.00e-148	518.00
IUUC-Ptr-091371	Pan troglodytes	72.94	0.00e+00	683.00
IUUC-Pan-092443	Papio anubis	69.44	6.00e-114	403.00
IUUC-Psi-093851	Pelodiscus sinensis	78.90	2.00e-109	387.00
IUUC-Pfo-097194	Poecilia formosa	52.49	1.00e-131	462.00
IUUC-Pab-097999	Pongo abelii	59.60	3.00e-108	384.00
IUUC-Pca-100410	Procavia capensis	67.76	2.00e-168	585.00
IUUC-Pva-102300	Pteropus vampyrus	64.78	2.00e-167	582.00
IUUC-Rno-105556	Rattus norvegicus	66.78	9.00e-111	392.00
IUUC-Sha-106992	Sarcophilus harrisii	83.33	8.00e-23	97.40
IUUC-Ssl-108406	Sclerotinia sclerotiorum	50.00	4.00e-09	55.80
IUUC-Sar-113121	Sorex araneus	84.48	1.00e-57	216.00
IUUC-Ssc-116435	Sus scrofa	68.04	2.00e-111	394.00
IUUC-Tgu-117489	Taeniopygia guttata	95.67	0.00e+00	912.00
IUUC-Tru-117927	Takifugu rubripes	52.14	1.00e-141	496.00
IUUC-Tsy-119372	Tarsius syrichta	77.91	1.00e-151	529.00
IUUC-Tni-120043	Tetraodon nigroviridis	49.17	2.00e-127	448.00
IUUC-Tvi-122588	Trichoderma virens	41.54	5.00e-10	59.30
IUUC-Tbe-127539	Tupaia belangeri	65.51	1.00e-168	585.00
IUUC-Ttr-129149	Tursiops truncatus	69.74	0.00e+00	679.00
IUUC-Vpa-130439	Vicugna pacos	54.31	1.00e-137	483.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence