iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cpo-021718

Ensembl Protein ID

ENSCPOP00000008106.2

UniProt Accession

H0VDP3; H0VDP3_CAVPO

Genbank Protein ID

ENSCPOP00000008106

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AAKN02054106

Gene Name

KDM5D

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCPOG00000009025.3	ENSCPOT00000009108.2	ENSCPOP00000008106.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	8.30e-09	35.5	326	369

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCp 49
           vC +C +g+ed+ +l+ C+ C++++H  Cl ++  +el ++  w C+
   Q: 326  VCRMCSRGDEDD-KLLLCDGCDDNYHIFCLLPP-LPELGTTL-WDCS 369
           8*********88.6*******************.99998886.9996 PP

Organism

Cavia porcellus

Protein Sequence
(Fasta)

MEPGSDDFLP PPECPVFEPS WAEFRDPLGY IAKIRPIAEK SGICKIRPPA DWQPPFAVEV 60
DNFRFTPRIQ RLNELEAQTR VKLNYLDQIA KFWEIQGSSL KIPNVERRIL DLYSLSKIVV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGCCGG GGTCCGACGA CTTCTTGCCG CCGCCGGAGT GCCCGGTGTT CGAGCCTAGC 60
TGGGCCGAGT TCCGAGACCC TCTTGGTTAC ATCGCGAAAA TCAGGCCCAT CGCCGAGAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001606--ARID_dom
IPR003347--JmjC_dom
IPR003349--JmjN
IPR013637--Lys_sp_deMease-like_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51011--ARID
PS51184--JMJC
PS51183--JMJN
PS01359--ZF_PHD_1

Pfam

PF01388--ARID
PF02373--JmjC
PF02375--JmjN
PF00628--PHD
PF08429--PLU-1

SMART

SM00501--BRIGHT
SM00558--JmjC
SM00545--JmjN
SM00249--PHD

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0003677--F:DNA binding
GO:0032453--F:histone demethylase activity (H3-K4 specific)
GO:0016706--F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0008270--F:zinc ion binding
GO:0045892--P:negative regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001327	Ailuropoda melanoleuca	98.11	0.00e+00	1387.00
IUUC-Apl-003524	Anas platyrhynchos	88.22	0.00e+00	931.00
IUUC-Bta-013099	Bos taurus	98.25	0.00e+00	1387.00
IUUC-Cja-018723	Callithrix jacchus	96.66	0.00e+00	1353.00
IUUC-Cfa-020954	Canis familiaris	97.96	0.00e+00	1384.00
IUUC-Csa-023946	Chlorocebus sabaeus	97.96	0.00e+00	1384.00
IUUC-Dre-028238	Danio rerio	76.94	0.00e+00	1131.00
IUUC-Dno-029435	Dasypus novemcinctus	97.82	0.00e+00	1383.00
IUUC-Dor-030226	Dipodomys ordii	82.98	0.00e+00	996.00
IUUC-Eca-033834	Equus caballus	97.67	0.00e+00	1382.00
IUUC-Fca-035766	Felis catus	91.29	0.00e+00	1261.00
IUUC-Gmo-039140	Gadus morhua	81.10	0.00e+00	1143.00
IUUC-Ggo-045492	Gorilla gorilla	97.96	0.00e+00	1385.00
IUUC-Hsa-046737	Homo sapiens	97.96	0.00e+00	1385.00
IUUC-Itr-048348	Ictidomys tridecemlineatus	97.96	0.00e+00	1387.00
IUUC-Lch-050517	Latimeria chalumnae	83.85	0.00e+00	1185.00
IUUC-Laf-054098	Loxodonta africana	94.48	0.00e+00	1316.00
IUUC-Mcc-055740	Macaca mulatta	97.96	0.00e+00	1385.00
IUUC-Meu-056643	Macropus eugenii	91.99	0.00e+00	1203.00
IUUC-Mmr-061032	Microcebus murinus	97.82	0.00e+00	1382.00
IUUC-Mdo-062754	Monodelphis domestica	85.95	0.00e+00	1106.00
IUUC-Mmu-063943	Mus musculus	97.38	0.00e+00	1378.00
IUUC-Mpu-066800	Mustela putorius furo	98.11	0.00e+00	1386.00
IUUC-Mlu-067109	Myotis lucifugus	97.67	0.00e+00	1381.00
IUUC-Nfi-068430	Neosartorya fischeri	37.71	4.00e-121	430.00
IUUC-Ncr-068763	Neurospora crassa	36.12	3.00e-117	417.00
IUUC-Nle-069569	Nomascus leucogenys	97.82	0.00e+00	1381.00
IUUC-Oan-073160	Ornithorhynchus anatinus	94.35	0.00e+00	1240.00
IUUC-Ocu-074440	Oryctolagus cuniculus	97.67	0.00e+00	1381.00
IUUC-Oga-088191	Otolemur garnettii	98.11	0.00e+00	1388.00
IUUC-Oar-090027	Ovis aries	98.25	0.00e+00	1385.00
IUUC-Ptr-091194	Pan troglodytes	97.49	0.00e+00	1357.00
IUUC-Pan-091829	Papio anubis	97.96	0.00e+00	1384.00
IUUC-Pma-094733	Petromyzon marinus	69.55	0.00e+00	1005.00
IUUC-Pfo-096645	Poecilia formosa	73.98	0.00e+00	1138.00
IUUC-Pab-097582	Pongo abelii	97.96	0.00e+00	1382.00
IUUC-Pca-100446	Procavia capensis	92.72	0.00e+00	1302.00
IUUC-Pva-102553	Pteropus vampyrus	91.56	0.00e+00	1274.00
IUUC-Pgr-103434	Puccinia graminis	35.98	4.00e-29	122.00
IUUC-Rno-105359	Rattus norvegicus	86.56	0.00e+00	1272.00
IUUC-Sha-106769	Sarcophilus harrisii	94.35	0.00e+00	1233.00
IUUC-Sre-115161	Sporisorium reilianum	34.84	2.00e-113	405.00
IUUC-Ssc-116354	Sus scrofa	98.11	0.00e+00	1389.00
IUUC-Tru-117667	Takifugu rubripes	73.04	0.00e+00	1013.00
IUUC-Ttr-128979	Tursiops truncatus	97.82	0.00e+00	1382.00
IUUC-Uma-129590	Ustilago maydis	34.02	2.00e-113	405.00
IUUC-Vpa-130433	Vicugna pacos	97.96	0.00e+00	1280.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence