iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-115239

Ensembl Protein ID

ENSSSCP00000008261.2

UniProt Accession

F1RJI2; F1RJI2_PIG

Genbank Protein ID

ENSSSCP00000008261

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

FP340504

Gene Name

RABGEF1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000007735.2	ENSSSCT00000008480.2	ENSSSCP00000008261.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/ZnF/ZnF_A20	1.10e-18	67.1	13	47

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/ZnF/ZnF_A20

   S: 1    dpskllCkkgCgfYGnpetngyCSkCyreelrrrr 35
           d+s+llCkkgCg+YGnp+++g+CSkC+ree++++r
   Q: 13   DQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKAR 47
           79*******************************86 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MSLKSERRGI HVDQSELLCK KGCGYYGNPA WQGFCSKCWR EEYHKARQKQ IQEDWELAER 60
LQREEEEAFA SSQSSQGAQS LTFSKFEEKK TNEKTRKVTT VKKFFSASSR VGSKKAEIQE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCTTCTGAA CGCTCCAGGT CAGGGACCCA GCACTAGGGC TGAGGGCGCC TCCTTCCTCA 60
TGCCCGACGG CTTTGTCGCC ACTGTCATCC ACGCCAGCCT CGCCCTCGCG CCACCCAGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR003123--VPS9
IPR002653--Znf_A20

PROSITE

PS51205--VPS9
PS51036--ZF_A20

Pfam

PF02204--VPS9
PF01754--zf-A20

SMART

SM00167--VPS9
SM00259--ZnF_A20

Gene Ontology

GO:0005829--C:cytosol
GO:0005769--C:early endosome
GO:0005730--C:nucleolus
GO:0003677--F:DNA binding
GO:0017112--F:Rab guanyl-nucleotide exchange factor activity
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0050728--P:negative regulation of inflammatory response
GO:1900165--P:negative regulation of interleukin-6 secretion
GO:1900235--P:negative regulation of Kit signaling pathway
GO:0002686--P:negative regulation of leukocyte migration
GO:0043305--P:negative regulation of mast cell degranulation
GO:0001933--P:negative regulation of protein phosphorylation
GO:0046580--P:negative regulation of Ras protein signal transduction
GO:0048261--P:negative regulation of receptor-mediated endocytosis
GO:0006612--P:protein targeting to membrane
GO:0060368--P:regulation of Fc receptor mediated stimulatory signaling pathway

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000198	Aegilops tauschii	31.96	1.00e-20	94.00
IUUC-Aml-001771	Ailuropoda melanoleuca	88.92	0.00e+00	764.00
IUUC-Atr-003154	Amborella trichopoda	36.52	1.00e-22	100.00
IUUC-Apl-004018	Anas platyrhynchos	91.48	0.00e+00	843.00
IUUC-Aca-005227	Anolis carolinensis	22.96	1.00e-08	54.70
IUUC-Aly-006138	Arabidopsis lyrata	35.45	8.00e-25	108.00
IUUC-Ath-006929	Arabidopsis thaliana	32.14	9.00e-26	110.00
IUUC-Ago-007776	Ashbya gossypii	30.00	5.00e-24	105.00
IUUC-Acl-008235	Aspergillus clavatus	31.12	4.00e-29	123.00
IUUC-Afl-008570	Aspergillus flavus	32.12	7.00e-32	132.00
IUUC-Afu-008815	Aspergillus fumigatus	30.90	1.00e-29	124.00
IUUC-Ani-009381	Aspergillus nidulans	30.39	6.00e-30	125.00
IUUC-Ang-009615	Aspergillus niger	29.28	3.00e-32	132.00
IUUC-Aor-010195	Aspergillus oryzae	31.79	2.00e-32	133.00
IUUC-Ate-010514	Aspergillus terreus	31.82	1.00e-30	128.00
IUUC-Ame-011365	Astyanax mexicanus	66.60	0.00e+00	669.00
IUUC-Bgr-012102	Blumeria graminis	28.85	5.00e-30	125.00
IUUC-Bta-013124	Bos taurus	98.37	0.00e+00	894.00
IUUC-Bci-013943	Botrytis cinerea	30.50	3.00e-30	126.00
IUUC-Bdi-014539	Brachypodium distachyon	33.94	4.00e-26	112.00
IUUC-Bol-016580	Brassica oleracea	35.14	3.00e-30	125.00
IUUC-Bra-017843	Brassica rapa	34.68	5.00e-30	125.00
IUUC-Cel-018199	Caenorhabditis elegans	34.10	1.00e-59	223.00
IUUC-Cja-019941	Callithrix jacchus	97.15	0.00e+00	881.00
IUUC-Cfa-020845	Canis familiaris	98.48	0.00e+00	826.00
IUUC-Cpo-022037	Cavia porcellus	96.75	0.00e+00	876.00
IUUC-Cre-022696	Chlamydomonas reinhardtii	32.49	9.00e-22	97.80
IUUC-Csa-023495	Chlorocebus sabaeus	96.75	0.00e+00	882.00
IUUC-Cho-025076	Choloepus hoffmanni	85.77	0.00e+00	740.00
IUUC-Cin-025400	Ciona intestinalis	45.02	4.00e-117	414.00
IUUC-Csv-025941	Ciona savignyi	37.90	1.00e-86	313.00
IUUC-Cgl-026725	Colletotrichum gloeosporioides	29.43	1.00e-27	117.00
IUUC-Cne-027057	Cryptococcus neoformans	34.24	7.00e-35	142.00
IUUC-Dre-028484	Danio rerio	71.74	0.00e+00	674.00
IUUC-Dno-028906	Dasypus novemcinctus	97.97	0.00e+00	883.00
IUUC-Dor-030124	Dipodomys ordii	86.56	0.00e+00	753.00
IUUC-Dse-031437	Dothistroma septosporum	28.32	3.00e-26	114.00
IUUC-Dme-031696	Drosophila melanogaster	32.15	2.00e-68	253.00
IUUC-Ete-032573	Echinops telfairi	92.80	0.00e+00	721.00
IUUC-Eca-033711	Equus caballus	98.78	0.00e+00	896.00
IUUC-Eeu-034459	Erinaceus europaeus	72.46	4.00e-77	282.00
IUUC-Fca-035447	Felis catus	95.33	0.00e+00	899.00
IUUC-Fal-036605	Ficedula albicollis	88.50	0.00e+00	786.00
IUUC-Fox-037967	Fusarium oxysporum	27.08	9.00e-19	88.60
IUUC-Fso-038110	Fusarium solani	30.04	2.00e-29	124.00
IUUC-Gmo-038785	Gadus morhua	66.67	0.00e+00	672.00
IUUC-Ggr-039760	Gaeumannomyces graminis	31.05	8.00e-28	119.00
IUUC-Gga-040584	Gallus gallus	92.48	0.00e+00	856.00
IUUC-Gac-042469	Gasterosteus aculeatus	64.19	1.00e-167	582.00
IUUC-Gma-044237	Glycine max	37.43	3.00e-26	112.00
IUUC-Ggo-044498	Gorilla gorilla	83.94	0.00e+00	741.00
IUUC-Hsa-046625	Homo sapiens	97.15	0.00e+00	881.00
IUUC-Hvu-047155	Hordeum vulgare	37.78	2.00e-26	112.00
IUUC-Itr-048753	Ictidomys tridecemlineatus	97.15	0.00e+00	877.00
IUUC-Kpa-049160	Komagataella pastoris	28.72	1.00e-24	108.00
IUUC-Lch-050529	Latimeria chalumnae	78.88	0.00e+00	855.00
IUUC-Lpe-051024	Leersia perrieri	34.84	1.00e-28	120.00
IUUC-Loc-052644	Lepisosteus oculatus	70.20	0.00e+00	670.00
IUUC-Lma-053102	Leptosphaeria maculans	31.75	1.00e-27	118.00
IUUC-Laf-054337	Loxodonta africana	94.72	0.00e+00	864.00
IUUC-Mcc-055659	Macaca mulatta	96.15	4.00e-177	613.00
IUUC-Meu-056084	Macropus eugenii	76.02	4.00e-94	338.00
IUUC-Mor-057255	Magnaporthe oryzae	29.96	3.00e-27	116.00
IUUC-Mpo-057454	Magnaporthe poae	31.05	2.00e-29	124.00
IUUC-Mtr-058098	Medicago truncatula	32.09	8.00e-30	124.00
IUUC-Mla-059068	Melampsora laricipopulina	29.79	1.00e-31	130.00
IUUC-Mga-059624	Meleagris gallopavo	78.55	0.00e+00	836.00
IUUC-Mvi-060282	Microbotryum violaceum	29.14	1.00e-26	115.00
IUUC-Mmr-061142	Microcebus murinus	97.56	0.00e+00	891.00
IUUC-Mdo-062289	Monodelphis domestica	93.09	0.00e+00	899.00
IUUC-Mmu-063961	Mus musculus	96.34	0.00e+00	874.00
IUUC-Mac-065188	Musa acuminata	33.07	1.00e-22	100.00
IUUC-Mpu-066291	Mustela putorius furo	97.56	0.00e+00	891.00
IUUC-Mlu-067431	Myotis lucifugus	93.90	0.00e+00	854.00
IUUC-Nfi-068422	Neosartorya fischeri	30.79	1.00e-30	127.00
IUUC-Ncr-068843	Neurospora crassa	29.89	6.00e-29	122.00
IUUC-Nle-069079	Nomascus leucogenys	96.54	0.00e+00	875.00
IUUC-Opr-070790	Ochotona princeps	94.44	6.00e-57	215.00
IUUC-Ont-071789	Oreochromis niloticus	68.41	3.00e-177	614.00
IUUC-Oan-072946	Ornithorhynchus anatinus	90.47	0.00e+00	822.00
IUUC-Ocu-073816	Oryctolagus cuniculus	98.17	0.00e+00	892.00
IUUC-Oba-075738	Oryza barthii	33.33	2.00e-17	83.60
IUUC-Obr-076355	Oryza brachyantha	38.46	2.00e-27	117.00
IUUC-Ogl-077592	Oryza glaberrima	28.74	2.00e-27	115.00
IUUC-Ogu-078197	Oryza glumaepatula	29.13	4.00e-27	115.00
IUUC-Oin-080047	Oryza indica	37.78	9.00e-26	110.00
IUUC-Olo-080317	Oryza longistaminata	28.74	5.00e-27	114.00
IUUC-Ome-081589	Oryza meridionalis	37.78	3.00e-26	113.00
IUUC-Oni-082700	Oryza nivara	33.71	1.00e-17	84.00
IUUC-Opu-083923	Oryza punctata	34.36	2.00e-21	95.90
IUUC-Oru-084318	Oryza rufipogon	33.71	1.00e-17	84.00
IUUC-Osa-086246	Oryza sativa	38.98	5.00e-06	41.60
IUUC-Ola-086730	Oryzias latipes	56.79	3.00e-150	525.00
IUUC-Olu-087719	Ostreococcus lucimarinus	34.46	1.00e-23	103.00
IUUC-Oga-088992	Otolemur garnettii	85.04	0.00e+00	892.00
IUUC-Oar-089789	Ovis aries	98.17	0.00e+00	894.00
IUUC-Ptr-091636	Pan troglodytes	97.15	0.00e+00	879.00
IUUC-Pan-092911	Papio anubis	96.54	0.00e+00	876.00
IUUC-Psi-093194	Pelodiscus sinensis	79.65	0.00e+00	847.00
IUUC-Pma-094212	Petromyzon marinus	48.80	5.00e-115	407.00
IUUC-Pno-094831	Phaeosphaeria nodorum	29.89	8.00e-28	118.00
IUUC-Ppa-095705	Physcomitrella patens	30.83	2.00e-29	123.00
IUUC-Pfo-096694	Poecilia formosa	65.29	5.00e-180	623.00
IUUC-Pab-097706	Pongo abelii	96.95	0.00e+00	878.00
IUUC-Pop-099891	Populus trichocarpa	32.84	7.00e-26	111.00
IUUC-Pca-100879	Procavia capensis	93.46	6.00e-91	327.00
IUUC-Ppe-101334	Prunus persica	32.17	5.00e-27	115.00
IUUC-Pva-103225	Pteropus vampyrus	82.46	0.00e+00	719.00
IUUC-Pgr-103564	Puccinia graminis	30.38	2.00e-31	130.00
IUUC-Ptt-103802	Puccinia triticina	29.84	6.00e-26	112.00
IUUC-Pte-104345	Pyrenophora teres	30.66	6.00e-28	119.00
IUUC-Pyt-104716	Pyrenophora triticirepentis	30.60	8.00e-29	122.00
IUUC-Rno-106101	Rattus norvegicus	95.93	0.00e+00	872.00
IUUC-Sce-106460	Saccharomyces cerevisiae	30.38	3.00e-25	109.00
IUUC-Sha-106919	Sarcophilus harrisii	80.21	0.00e+00	845.00
IUUC-Sja-107880	Schizosaccharomyces japonicus	32.40	1.00e-30	127.00
IUUC-Spo-108087	Schizosaccharomyces pombe	30.62	5.00e-28	119.00
IUUC-Ssl-108614	Sclerotinia sclerotiorum	29.82	1.00e-07	51.60
IUUC-Smo-109411	Selaginella moellendorffii	37.14	2.00e-28	120.00
IUUC-Sit-110678	Setaria italica	37.78	2.00e-26	113.00
IUUC-Sly-111526	Solanum lycopersicum	37.85	1.00e-25	110.00
IUUC-Stu-112494	Solanum tuberosum	38.42	3.00e-26	112.00
IUUC-Sar-112929	Sorex araneus	99.27	2.00e-165	575.00
IUUC-Sbi-114242	Sorghum bicolor	32.94	6.00e-28	118.00
IUUC-Sre-115224	Sporisorium reilianum	31.79	2.00e-30	127.00
IUUC-Tgu-117499	Taeniopygia guttata	89.84	0.00e+00	825.00
IUUC-Tru-118027	Takifugu rubripes	63.02	1.00e-142	499.00
IUUC-Tsy-119462	Tarsius syrichta	97.69	0.00e+00	865.00
IUUC-Tni-120855	Tetraodon nigroviridis	60.36	2.00e-174	604.00
IUUC-Tca-121213	Theobroma cacao	35.45	7.00e-25	108.00
IUUC-Tre-122186	Trichoderma reesei	30.19	6.00e-29	122.00
IUUC-Tvi-122541	Trichoderma virens	27.97	3.00e-29	123.00
IUUC-Tae-123631	Triticum aestivum	38.89	7.00e-27	114.00
IUUC-Tur-126572	Triticum urartu	38.89	2.00e-26	114.00
IUUC-Tme-127023	Tuber melanosporum	32.93	4.00e-32	132.00
IUUC-Tbe-127453	Tupaia belangeri	97.93	0.00e+00	779.00
IUUC-Ttr-128526	Tursiops truncatus	98.58	0.00e+00	892.00
IUUC-Uma-129660	Ustilago maydis	32.56	1.00e-30	128.00
IUUC-Vda-129737	Verticillium dahliae	28.67	1.00e-24	108.00
IUUC-Vpa-130505	Vicugna pacos	91.45	0.00e+00	716.00
IUUC-Vvi-131088	Vitis vinifera	37.08	8.00e-24	104.00
IUUC-Xtr-132799	Xenopus tropicalis	75.61	0.00e+00	741.00
IUUC-Xma-133345	Xiphophorus maculatus	65.88	8.00e-176	609.00
IUUC-Yli-134416	Yarrowia lipolytica	32.12	2.00e-32	133.00
IUUC-Zma-134750	Zea mays	37.78	3.00e-26	112.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence