iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007656

Ensembl Protein ID

AT1G04140.2

UniProt Accession

F4I458; F4I458_ARATH

Genbank Protein ID

AEE27662.1

Protein Name

Transducin family protein / WD-40 repeat family protein

Genbank Nucleotide ID

CP002684

Gene Name

At1g04140; F20D22.9; F20D22_9

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G04140	AT1G04140.1	AT1G04140.1
AT1G04140	AT1G04140.2	AT1G04140.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.40e-11	43.8	151	183

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 9    laf...sdtllvsGsdDgtikvWDlrtgvllks 38
           ++f   ++ +++sGs D+ +++W+ +tg ++++
   Q: 151  VRFhprHSEIVASGSLDHEVRLWNAKTGECIRT 183
           55665533899******************9975 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MTESIWLNDQ SSPRSMIPSA KPVANVHRQR CRSVFKLLVQ REISPNTKFV PRKRWGESRC 60
DADSSCGTTS EPVREQGLNL ISWVEAESLQ HLSAKYCPLV PPPRSTIAAA FSSDGRTLAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTATGAAGAT TGTGTTTAGA TAATCAAGAA CAGGGCATTT CCAATTAGAG AGAAAAAAAG 60
GAGATCCTTT TAATGTATCG CAGACCATCC TCAGCTATGG CCTCCTGTTT TTCCTTTTAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0043231--C:intracellular membrane-bounded organelle
GO:0006914--P:autophagy

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001917	Ailuropoda melanoleuca	36.92	2.00e-28	120.00
IUUC-Atr-002557	Amborella trichopoda	47.62	4.00e-111	395.00
IUUC-Apl-004186	Anas platyrhynchos	35.75	7.00e-29	122.00
IUUC-Aca-004419	Anolis carolinensis	35.98	6.00e-28	119.00
IUUC-Aly-005774	Arabidopsis lyrata	94.96	0.00e+00	1494.00
IUUC-Ame-011354	Astyanax mexicanus	38.89	1.00e-27	118.00
IUUC-Bta-012455	Bos taurus	36.92	4.00e-28	120.00
IUUC-Bdi-014580	Brachypodium distachyon	56.28	6.00e-103	367.00
IUUC-Bol-016094	Brassica oleracea	82.02	0.00e+00	1195.00
IUUC-Bra-017308	Brassica rapa	83.29	0.00e+00	1246.00
IUUC-Cja-019073	Callithrix jacchus	36.92	2.00e-28	119.00
IUUC-Cfa-020994	Canis familiaris	36.92	2.00e-28	120.00
IUUC-Cpo-022101	Cavia porcellus	36.92	2.00e-28	121.00
IUUC-Csa-023273	Chlorocebus sabaeus	36.92	2.00e-28	120.00
IUUC-Cin-025567	Ciona intestinalis	38.79	7.00e-23	101.00
IUUC-Csv-026005	Ciona savignyi	34.44	2.00e-22	98.60
IUUC-Dre-028282	Danio rerio	41.49	6.00e-28	119.00
IUUC-Dno-029948	Dasypus novemcinctus	42.94	4.00e-28	120.00
IUUC-Dor-030568	Dipodomys ordii	37.09	3.00e-28	120.00
IUUC-Ete-032864	Echinops telfairi	36.92	3.00e-28	120.00
IUUC-Eca-034392	Equus caballus	36.92	2.00e-28	120.00
IUUC-Eeu-034440	Erinaceus europaeus	37.09	3.00e-28	120.00
IUUC-Fca-035359	Felis catus	36.92	3.00e-28	120.00
IUUC-Fal-037483	Ficedula albicollis	35.29	5.00e-28	119.00
IUUC-Gmo-039343	Gadus morhua	44.59	8.00e-28	119.00
IUUC-Gga-040787	Gallus gallus	35.98	1.00e-27	118.00
IUUC-Gac-041321	Gasterosteus aculeatus	43.51	2.00e-26	114.00
IUUC-Gma-044022	Glycine max	57.76	0.00e+00	830.00
IUUC-Ggo-044775	Gorilla gorilla	36.92	3.00e-28	120.00
IUUC-Hsa-045708	Homo sapiens	36.92	3.00e-28	120.00
IUUC-Hvu-047536	Hordeum vulgare	52.30	0.00e+00	706.00
IUUC-Itr-048376	Ictidomys tridecemlineatus	37.09	2.00e-28	120.00
IUUC-Lpe-050684	Leersia perrieri	51.14	0.00e+00	665.00
IUUC-Loc-052881	Lepisosteus oculatus	43.24	3.00e-27	117.00
IUUC-Laf-053342	Loxodonta africana	36.92	6.00e-29	122.00
IUUC-Mcc-055848	Macaca mulatta	36.92	3.00e-28	120.00
IUUC-Meu-056320	Macropus eugenii	36.45	4.00e-28	120.00
IUUC-Mtr-058484	Medicago truncatula	55.06	0.00e+00	794.00
IUUC-Mga-059401	Meleagris gallopavo	35.98	6.00e-28	119.00
IUUC-Mmr-061037	Microcebus murinus	42.65	6.00e-24	106.00
IUUC-Mdo-062484	Monodelphis domestica	43.51	4.00e-28	120.00
IUUC-Mmu-064090	Mus musculus	37.09	2.00e-28	121.00
IUUC-Mac-065308	Musa acuminata	52.80	0.00e+00	737.00
IUUC-Mpu-066165	Mustela putorius furo	36.92	2.00e-28	120.00
IUUC-Mlu-068038	Myotis lucifugus	37.09	3.00e-28	120.00
IUUC-Nle-069361	Nomascus leucogenys	36.92	3.00e-28	120.00
IUUC-Opr-070360	Ochotona princeps	35.78	8.00e-28	119.00
IUUC-Ont-071277	Oreochromis niloticus	43.92	3.00e-27	117.00
IUUC-Oan-073623	Ornithorhynchus anatinus	42.38	5.00e-27	115.00
IUUC-Ocu-074600	Oryctolagus cuniculus	36.92	2.00e-28	120.00
IUUC-Oba-075024	Oryza barthii	64.96	2.00e-93	336.00
IUUC-Obr-076273	Oryza brachyantha	50.26	0.00e+00	656.00
IUUC-Ogl-077315	Oryza glaberrima	49.29	0.00e+00	641.00
IUUC-Ogu-078025	Oryza glumaepatula	64.96	2.00e-93	336.00
IUUC-Oni-082463	Oryza nivara	64.96	4.00e-93	335.00
IUUC-Opu-084041	Oryza punctata	64.96	9.00e-94	337.00
IUUC-Oru-085075	Oryza rufipogon	57.51	3.00e-103	369.00
IUUC-Osa-085397	Oryza sativa	49.29	0.00e+00	644.00
IUUC-Ola-086729	Oryzias latipes	43.92	3.00e-27	117.00
IUUC-Olu-087735	Ostreococcus lucimarinus	50.25	6.00e-55	207.00
IUUC-Oga-089113	Otolemur garnettii	41.78	7.00e-27	115.00
IUUC-Oar-090171	Ovis aries	36.45	4.00e-28	120.00
IUUC-Ptr-090970	Pan troglodytes	36.92	3.00e-28	120.00
IUUC-Pan-092778	Papio anubis	36.92	2.00e-28	120.00
IUUC-Psi-093571	Pelodiscus sinensis	35.98	5.00e-28	119.00
IUUC-Pma-094563	Petromyzon marinus	41.89	4.00e-26	111.00
IUUC-Ppa-095890	Physcomitrella patens	64.77	1.00e-94	340.00
IUUC-Pfo-097365	Poecilia formosa	44.30	2.00e-26	114.00
IUUC-Pab-098647	Pongo abelii	37.09	3.00e-28	120.00
IUUC-Pop-099626	Populus trichocarpa	62.86	0.00e+00	884.00
IUUC-Pca-101035	Procavia capensis	37.09	9.00e-29	122.00
IUUC-Ppe-101783	Prunus persica	58.71	0.00e+00	835.00
IUUC-Pva-103187	Pteropus vampyrus	37.09	2.00e-27	118.00
IUUC-Rno-105701	Rattus norvegicus	35.51	3.00e-26	114.00
IUUC-Sha-107612	Sarcophilus harrisii	36.45	2.00e-28	120.00
IUUC-Smo-109107	Selaginella moellendorffii	63.52	3.00e-84	305.00
IUUC-Sit-110786	Setaria italica	52.49	3.00e-98	352.00
IUUC-Sly-110859	Solanum lycopersicum	54.33	0.00e+00	733.00
IUUC-Stu-112031	Solanum tuberosum	54.06	0.00e+00	739.00
IUUC-Sar-113242	Sorex araneus	43.21	7.00e-28	119.00
IUUC-Ssc-116094	Sus scrofa	36.92	2.00e-28	121.00
IUUC-Tru-118308	Takifugu rubripes	43.92	3.00e-27	117.00
IUUC-Tsy-119552	Tarsius syrichta	43.17	3.00e-24	107.00
IUUC-Tca-121568	Theobroma cacao	59.26	0.00e+00	863.00
IUUC-Tae-124768	Triticum aestivum	67.30	2.00e-97	349.00
IUUC-Tur-126480	Triticum urartu	55.02	0.00e+00	679.00
IUUC-Tbe-127902	Tupaia belangeri	40.74	4.00e-26	113.00
IUUC-Ttr-129278	Tursiops truncatus	36.92	2.00e-28	120.00
IUUC-Vpa-130741	Vicugna pacos	37.36	2.00e-26	114.00
IUUC-Vvi-131437	Vitis vinifera	57.99	0.00e+00	850.00
IUUC-Xtr-132247	Xenopus tropicalis	41.98	9.00e-27	115.00
IUUC-Xma-134277	Xiphophorus maculatus	43.92	2.00e-27	117.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence