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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Sce-106331
UUCD1 version UUC-SaC-00149
Ensembl Protein ID YNL317W
UniProt Accession P42841; D6W0M8; Q6B1M2; PFS2_YEAST
Genbank Protein ID CAA86378.1; CAA96247.1; AAT93077.1; DAA10244.1
Protein Name Polyadenylation factor subunit 2
Genbank Nucleotide ID Z46259; Z71593; AY693058; BK006947
Gene Name PFS2; YNL317W; N0348
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
YNL317W YNL317W YNL317W
Annotation
mRNA Expression
GEOFFGED
Protein-protein Interaction
IIDiRefIndexHINTMentha
Post-translational Modifications (PTMs)
dbPAFBioGRID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 6.30e-30 100.5 176 213
UBD/Beta-Prp 5.90e-46 155.4 91 297
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
    Ht+s++++af +d +v++sdD+ +k+W+++ g++++
   Q: 176 HTESIRDMAFssNDSKFVTCSDDNILKIWNFSNGKQER 213
    ***********66699**************99999875 PP
   


   UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkllrsl.sgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgd 107
    + k+vi +++++p+++ l+++ ++g +w++++ ++ ++l + h+++vt++k+s+d++++++g D++ik+w ++ + + +h++s+++++fs +++
   Q: 91 KVKHVIPAIQWTPEGRRLVVATYSGEFSLWNASSFTF-ETLmQAHDSAVTTMKYSHDSDWMISGDADGMIKIWQPNFSMVKEIDAAHTESIRDMAFSSNDS 190
    568999****************************666.6666*******************************999888888888**************** PP
   S: 108 klvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng.kelvsgsldgtvklw 207
    k+v+ s+d+++++w+ ++g+ + +lsgh+ v + +hp+ l++s+s+D+ v+lWd ++g+++ + ++ v ++ f++++ + l+++s+d++ +++
   Q: 191 KFVTCSDDNILKIWNFSNGKQER-VLSGHHWDVKSCDWHPEMGLIASASKDNLVKLWDPRSGNCISSILK-FKHTVLKTRFQPTKgNLLMAISKDKSCRVF 289
    ***********************.********************************************99.************9879999*********** PP
   S: 208 dlq....t 211
    d++ +
   Q: 290 DIRysmkE 297
    **964322 PP
   

Organism Saccharomyces cerevisiae
Functional Description
(View)

Functional Description



     Integral and essential component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. May bridge the CPF and CFIA complexes.
Integral and essential component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. May bridge the CPF and CFIA complexes.
Protein Sequence
(Fasta)
MDGHNQNQYQ NQNQIQQSQQ PPLKKYVTQR RSVDVSSPYI NLYYNRRHGL PNLVVEPETS 60
YTIDIMPPNA YRGRDRVINL PSKFTHLSSN KVKHVIPAIQ WTPEGRRLVV ATYSGEFSLW 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Sce-106331|E3,WD_repeat;UBD,Beta-Prp|Saccharomyces cerevisiae
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGGACGGGC ATAATCAGAA CCAGTACCAG AATCAGAATC AAATTCAGCA GTCACAACAA 60
CCACCTCTGA AGAAATATGT GACACAGAGA CGATCGGTAG ACGTGAGTTC TCCGTATATT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Sce-106331|E3,WD_repeat;UBD,Beta-Prp|Saccharomyces cerevisiae
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0903--Direct protein sequencing
KW-0507--mRNA processing
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0006378--P:mRNA polyadenylation
GO:0098789--P:pre-mRNA cleavage required for polyadenylation

KEGG sce:YNL317W
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001064 Aegilops tauschii 38.62 5.00e-73 266.00
IUUC-Aml-001363 Ailuropoda melanoleuca 38.81 7.00e-74 270.00
IUUC-Atr-003030 Amborella trichopoda 40.11 6.00e-80 290.00
IUUC-Apl-003409 Anas platyrhynchos 38.93 2.00e-75 275.00
IUUC-Aca-004694 Anolis carolinensis 39.14 8.00e-77 280.00
IUUC-Aly-006063 Arabidopsis lyrata 38.98 9.00e-81 292.00
IUUC-Ath-006583 Arabidopsis thaliana 39.32 3.00e-78 283.00
IUUC-Ago-007805 Ashbya gossypii 65.41 0.00e+00 641.00
IUUC-Acl-008075 Aspergillus clavatus 42.30 3.00e-82 297.00
IUUC-Afl-008582 Aspergillus flavus 43.14 7.00e-84 302.00
IUUC-Afu-008817 Aspergillus fumigatus 39.83 3.00e-70 256.00
IUUC-Ani-009391 Aspergillus nidulans 38.64 5.00e-73 266.00
IUUC-Ang-009750 Aspergillus niger 44.84 1.00e-71 260.00
IUUC-Aor-010085 Aspergillus oryzae 43.14 9.00e-84 302.00
IUUC-Ate-010397 Aspergillus terreus 42.02 1.00e-82 298.00
IUUC-Ame-010741 Astyanax mexicanus 41.87 1.00e-52 199.00
IUUC-Bgr-012169 Blumeria graminis 44.02 2.00e-89 321.00
IUUC-Bta-013265 Bos taurus 39.14 1.00e-76 279.00
IUUC-Bci-013762 Botrytis cinerea 45.01 2.00e-96 344.00
IUUC-Bdi-014849 Brachypodium distachyon 39.95 2.00e-80 291.00
IUUC-Bol-015325 Brassica oleracea 37.56 3.00e-80 290.00
IUUC-Bra-017064 Brassica rapa 39.07 8.00e-82 295.00
IUUC-Cel-018378 Caenorhabditis elegans 35.49 1.00e-73 269.00
IUUC-Cja-019547 Callithrix jacchus 39.14 9.00e-77 280.00
IUUC-Cfa-020031 Canis familiaris 39.14 9.00e-77 280.00
IUUC-Cpo-021554 Cavia porcellus 40.71 7.00e-76 277.00
IUUC-Cre-022830 Chlamydomonas reinhardtii 31.69 2.00e-44 171.00
IUUC-Csa-023146 Chlorocebus sabaeus 38.87 3.00e-76 278.00
IUUC-Cho-024679 Choloepus hoffmanni 42.16 3.00e-71 261.00
IUUC-Cin-025415 Ciona intestinalis 37.64 4.00e-72 263.00
IUUC-Csv-026003 Ciona savignyi 37.74 3.00e-71 260.00
IUUC-Cgl-026391 Colletotrichum gloeosporioides 45.53 3.00e-95 340.00
IUUC-Cne-026983 Cryptococcus neoformans 36.12 6.00e-68 249.00
IUUC-Cme-027147 Cyanidioschyzon merolae 41.40 4.00e-81 293.00
IUUC-Dre-028545 Danio rerio 38.80 6.00e-75 274.00
IUUC-Dno-029677 Dasypus novemcinctus 39.14 7.00e-77 280.00
IUUC-Dse-031371 Dothistroma septosporum 40.72 3.00e-85 307.00
IUUC-Dme-031663 Drosophila melanogaster 40.38 1.00e-76 279.00
IUUC-Ete-032511 Echinops telfairi 34.81 4.00e-56 211.00
IUUC-Eca-034152 Equus caballus 38.81 1.00e-76 280.00
IUUC-Fca-035820 Felis catus 39.41 8.00e-77 280.00
IUUC-Fox-037958 Fusarium oxysporum 45.23 2.00e-93 334.00
IUUC-Fso-038162 Fusarium solani 45.28 9.00e-94 335.00
IUUC-Gmo-039708 Gadus morhua 38.93 3.00e-74 271.00
IUUC-Ggr-040031 Gaeumannomyces graminis 42.26 3.00e-85 306.00
IUUC-Gga-040963 Gallus gallus 38.81 7.00e-77 280.00
IUUC-Gac-041541 Gasterosteus aculeatus 38.42 3.00e-72 265.00
IUUC-Gma-044352 Glycine max 41.10 3.00e-83 301.00
IUUC-Ggo-045564 Gorilla gorilla 39.14 1.00e-76 280.00
IUUC-Hsa-045833 Homo sapiens 39.14 1.00e-76 280.00
IUUC-Hvu-047848 Hordeum vulgare 41.03 1.00e-59 221.00
IUUC-Itr-048083 Ictidomys tridecemlineatus 39.14 1.00e-76 280.00
IUUC-Kpa-049308 Komagataella pastoris 48.67 2.00e-116 410.00
IUUC-Lch-050525 Latimeria chalumnae 39.13 4.00e-76 278.00
IUUC-Lpe-051364 Leersia perrieri 36.60 9.00e-65 239.00
IUUC-Loc-052696 Lepisosteus oculatus 38.87 2.00e-76 278.00
IUUC-Lma-052951 Leptosphaeria maculans 42.38 3.00e-91 327.00
IUUC-Laf-053653 Loxodonta africana 39.14 2.00e-76 279.00
IUUC-Mcc-055797 Macaca mulatta 39.14 1.00e-76 280.00
IUUC-Meu-056331 Macropus eugenii 45.02 1.00e-63 236.00
IUUC-Mor-057168 Magnaporthe oryzae 43.32 1.00e-90 325.00
IUUC-Mpo-057510 Magnaporthe poae 49.36 5.00e-70 255.00
IUUC-Mtr-058032 Medicago truncatula 41.60 2.00e-85 308.00
IUUC-Mla-058852 Melampsora laricipopulina 37.91 7.00e-79 285.00
IUUC-Mga-059311 Meleagris gallopavo 39.14 8.00e-77 280.00
IUUC-Mvi-060544 Microbotryum violaceum 40.06 3.00e-77 280.00
IUUC-Mmr-061143 Microcebus murinus 39.14 1.00e-76 280.00
IUUC-Mdo-061977 Monodelphis domestica 39.14 1.00e-76 280.00
IUUC-Mmu-063922 Mus musculus 39.14 1.00e-76 280.00
IUUC-Mac-064961 Musa acuminata 40.49 2.00e-87 314.00
IUUC-Mpu-066079 Mustela putorius furo 42.81 3.00e-74 271.00
IUUC-Mlu-067247 Myotis lucifugus 39.14 8.00e-77 280.00
IUUC-Nfi-068255 Neosartorya fischeri 42.53 1.00e-79 288.00
IUUC-Ncr-068909 Neurospora crassa 46.45 9.00e-96 342.00
IUUC-Nle-068994 Nomascus leucogenys 39.14 1.00e-76 280.00
IUUC-Opr-071079 Ochotona princeps 39.14 1.00e-76 280.00
IUUC-Ont-071971 Oreochromis niloticus 38.86 5.00e-75 274.00
IUUC-Oan-073135 Ornithorhynchus anatinus 40.71 1.00e-75 276.00
IUUC-Ocu-073982 Oryctolagus cuniculus 38.81 1.00e-76 280.00
IUUC-Oba-075297 Oryza barthii 36.12 1.00e-67 249.00
IUUC-Obr-076641 Oryza brachyantha 40.05 5.00e-79 286.00
IUUC-Ogl-077539 Oryza glaberrima 39.60 7.00e-60 223.00
IUUC-Ogu-078807 Oryza glumaepatula 36.12 1.00e-67 249.00
IUUC-Oin-079229 Oryza indica 39.16 2.00e-79 288.00
IUUC-Olo-080371 Oryza longistaminata 36.21 1.00e-67 248.00
IUUC-Ome-081149 Oryza meridionalis 35.96 8.00e-67 246.00
IUUC-Oni-082970 Oryza nivara 36.21 1.00e-67 248.00
IUUC-Opu-083415 Oryza punctata 35.96 4.00e-65 240.00
IUUC-Oru-085236 Oryza rufipogon 36.21 2.00e-67 248.00
IUUC-Ola-087421 Oryzias latipes 38.80 2.00e-75 274.00
IUUC-Olu-087821 Ostreococcus lucimarinus 34.81 3.00e-68 249.00
IUUC-Oga-088132 Otolemur garnettii 39.14 1.00e-76 279.00
IUUC-Oar-089513 Ovis aries 39.14 1.00e-76 279.00
IUUC-Ptr-090717 Pan troglodytes 39.14 1.00e-76 280.00
IUUC-Pan-092108 Papio anubis 39.14 1.00e-76 280.00
IUUC-Psi-093892 Pelodiscus sinensis 38.81 1.00e-76 280.00
IUUC-Pma-094561 Petromyzon marinus 39.30 6.00e-76 277.00
IUUC-Pno-094943 Phaeosphaeria nodorum 41.09 4.00e-90 323.00
IUUC-Ppa-095359 Physcomitrella patens 41.34 2.00e-84 304.00
IUUC-Pfo-096516 Poecilia formosa 38.44 2.00e-73 268.00
IUUC-Pab-097759 Pongo abelii 39.14 9.00e-77 280.00
IUUC-Pop-099553 Populus trichocarpa 40.19 2.00e-82 298.00
IUUC-Ppe-101957 Prunus persica 42.03 5.00e-85 306.00
IUUC-Pva-102918 Pteropus vampyrus 38.81 1.00e-76 280.00
IUUC-Pgr-103594 Puccinia graminis 38.95 2.00e-77 281.00
IUUC-Ptt-103879 Puccinia triticina 43.16 7.00e-72 263.00
IUUC-Pte-104419 Pyrenophora teres 40.92 2.00e-92 331.00
IUUC-Pyt-104718 Pyrenophora triticirepentis 42.06 9.00e-91 325.00
IUUC-Rno-105838 Rattus norvegicus 39.14 1.00e-76 280.00
IUUC-Sha-107435 Sarcophilus harrisii 40.71 5.00e-76 277.00
IUUC-Sja-107796 Schizosaccharomyces japonicus 42.46 1.00e-87 314.00
IUUC-Spo-108163 Schizosaccharomyces pombe 42.67 2.00e-88 317.00
IUUC-Smo-108972 Selaginella moellendorffii 43.06 2.00e-86 310.00
IUUC-Sit-109729 Setaria italica 40.00 7.00e-78 283.00
IUUC-Sly-111679 Solanum lycopersicum 40.29 2.00e-84 305.00
IUUC-Sar-113157 Sorex araneus 38.81 1.00e-76 280.00
IUUC-Sbi-114853 Sorghum bicolor 37.87 6.00e-79 286.00
IUUC-Sre-115085 Sporisorium reilianum 32.09 5.00e-66 243.00
IUUC-Ssc-116286 Sus scrofa 38.71 6.00e-75 274.00
IUUC-Tgu-117219 Taeniopygia guttata 39.14 9.00e-77 280.00
IUUC-Tru-117550 Takifugu rubripes 35.08 3.00e-75 273.00
IUUC-Tsy-119294 Tarsius syrichta 39.14 9.00e-77 280.00
IUUC-Tni-120561 Tetraodon nigroviridis 38.81 3.00e-75 275.00
IUUC-Tca-121347 Theobroma cacao 39.81 8.00e-85 306.00
IUUC-Tre-122018 Trichoderma reesei 45.55 5.00e-92 330.00
IUUC-Tvi-122413 Trichoderma virens 45.55 3.00e-91 327.00
IUUC-Tae-123904 Triticum aestivum 39.95 4.00e-80 290.00
IUUC-Tme-127077 Tuber melanosporum 49.27 8.00e-101 358.00
IUUC-Tbe-127744 Tupaia belangeri 29.83 4.00e-39 155.00
IUUC-Ttr-128777 Tursiops truncatus 34.81 5.00e-56 211.00
IUUC-Uma-129568 Ustilago maydis 33.70 3.00e-64 237.00
IUUC-Vda-129834 Verticillium dahliae 45.40 1.00e-93 334.00
IUUC-Vvi-131360 Vitis vinifera 41.48 2.00e-83 301.00
IUUC-Xtr-132630 Xenopus tropicalis 39.08 2.00e-72 265.00
IUUC-Xma-133665 Xiphophorus maculatus 38.81 4.00e-75 274.00
IUUC-Yli-134556 Yarrowia lipolytica 40.77 1.00e-91 328.00
IUUC-Zma-135787 Zea mays 37.41 4.00e-81 293.00
Created Date 25-Jun-2017

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