iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099221

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

UBIQUITIN-SPECIFIC PROTEASE 6 family protein

Genbank Nucleotide ID

CM000339

Gene Name

POPTRDRAFT_592725; POPTR_0003s02840g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0003s02840	POPTR_0003s02840.1	POPTR_0003s02840.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	2.00e-62	212.4	105	477
ULD/UDP/UBQ/UBQ_Other	9.10e-09	36.2	17	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 2    GlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefs.....gy 87
           Gl NlgNtCYmNS++QcL+++p+l+++l +  ++k ++   ++++  l+ + ++lf+el +++ k v+p +++ +l+k+ ++f       y
   Q: 105  GLFNLGNTCYMNSTVQCLHSVPDLKSALSNYPSQKSSDL--DQTSHMLTAATRELFNEL-DKSVKPVAPMQFWMVLRKKYPQFGqlhngVY 192
           9*****************************555555554..68999*************.99999******************9899999* PP
   S: 88   eqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpg 178
           +qqDa+E++++ll +l+++l                       ++  +++n+++i++lF+++l s++ c+e +++ss++e+ ++l++++++
   Q: 193  MQQDAEECWTQLLYTLSQSL-----------------------RSPSPSQNPDTIKELFGIELVSRVHCQESGEESSETESVYSLKCHISQ 260
           ********************.......................467899*****************************************9 PP
   S: 179  keetkkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfcts.. 267
           + +     l++ L++  k e le+     +++  ++    k+  ++ lP++L++++ Rf +++e +++ ki +kv++pl+Ld+  fc++  
   Q: 261  EVN----HLHEGLKHGLKSE-LEK----ASPSLGRSAIYLKESCINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLQLDVYDFCSDdl 342
           997....5777777776665.553....678889999999*************************************************77 PP
   S: 268  ..................................peekqke...............................kkkYeLiavvvHsG.slss 292
                                                   +                               + +Y+L+av+ H+G s++s
   Q: 343  rknleaprqilrdeegkkaglkakvksssskdndA-----KmtdvegpsnesvkssnstsgeggssdkeshlTGIYDLVAVLTHKGrSADS 428
           77777777777777766666666666655555550.....05555555555555666666777777777777******************* PP
   S: 293  GHYvayvknekgkWllfdDskVtevkeeevleetg....staYvlfYkr 337
           GHYva+vk+e+gkW+++dD++  + +ee++ + +g    + aY+++Yk 
   Q: 429  GHYVAWVKQESGKWIEYDDDNPIPQREEDITKLSGggdwHMAYICMYKA 477
           ********************************888************97 PP

ULD/UDP/UBQ/UBQ_Other

   S: 16   kvnpsdtVaeLKekiekklgippeqqrLiykGkiLeddktLadyglkdgstihllek 72
           +++ s +  ++K ++++++g+ppe+q++++kG +L+dd ++a +g+k+g++ +++ +
   Q: 17   EIDTSQPPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDADWATVGVKEGQKMMMMGT 73
           4677777778999*****************************************976 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MLTVSVKWLK EVFPKVEIDT SQPPYVFKCQ LYDLTGVPPE RQKIMVKGGL LKDDADWATV 60
GVKEGQKMMM MGTADEIVKA PEKGPIFMED LPEEEQVVAL GHTAGLFNLG NTCYMNSTVQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAATCTCCTT CCTAAAAGCA AAACAAGCAA GTAAATCCAA GAAATGAAAC CCTTAAAATT 60
CACGAAGCTG AGAGTTTTCC TTCTGCTCAA GCAAACTCGA AAATAGAAGA AAAATTTGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0645--Protease
KW-1185--Reference proteome

Interpro

IPR001394--Peptidase_C19_UCH
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom
IPR018200--USP_CS
IPR028889--USP_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2
PS00972--USP_1
PS00973--USP_2
PS50235--USP_3

Pfam

PF00240--ubiquitin
PF00443--UCH

SMART

SM00213--UBQ

Gene Ontology

GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0003s02840g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000893	Aegilops tauschii	55.80	3.00e-83	301.00
IUUC-Aml-002053	Ailuropoda melanoleuca	41.45	6.00e-105	374.00
IUUC-Atr-002725	Amborella trichopoda	77.89	0.00e+00	739.00
IUUC-Apl-004031	Anas platyrhynchos	41.60	3.00e-105	374.00
IUUC-Aca-004361	Anolis carolinensis	40.95	7.00e-106	377.00
IUUC-Aly-006078	Arabidopsis lyrata	77.45	0.00e+00	731.00
IUUC-Ath-007658	Arabidopsis thaliana	77.82	0.00e+00	745.00
IUUC-Ago-007796	Ashbya gossypii	31.34	3.00e-61	228.00
IUUC-Acl-008258	Aspergillus clavatus	36.22	5.00e-79	288.00
IUUC-Afl-008732	Aspergillus flavus	37.30	3.00e-82	298.00
IUUC-Afu-008755	Aspergillus fumigatus	36.33	2.00e-78	286.00
IUUC-Ani-009148	Aspergillus nidulans	36.79	1.00e-82	300.00
IUUC-Ang-009878	Aspergillus niger	36.02	2.00e-77	282.00
IUUC-Aor-010239	Aspergillus oryzae	37.30	3.00e-82	298.00
IUUC-Ate-010243	Aspergillus terreus	36.61	4.00e-80	291.00
IUUC-Ame-011327	Astyanax mexicanus	31.42	2.00e-22	99.40
IUUC-Bgr-012231	Blumeria graminis	34.90	3.00e-80	292.00
IUUC-Bta-012553	Bos taurus	41.77	4.00e-106	377.00
IUUC-Bci-013606	Botrytis cinerea	37.09	6.00e-83	301.00
IUUC-Bdi-014567	Brachypodium distachyon	72.14	0.00e+00	676.00
IUUC-Bol-015565	Brassica oleracea	77.71	0.00e+00	747.00
IUUC-Bra-017297	Brassica rapa	77.18	0.00e+00	746.00
IUUC-Cel-018140	Caenorhabditis elegans	35.70	2.00e-75	275.00
IUUC-Cja-019516	Callithrix jacchus	40.92	5.00e-105	374.00
IUUC-Cfa-020808	Canis familiaris	41.57	2.00e-106	379.00
IUUC-Cpo-021688	Cavia porcellus	41.37	5.00e-105	374.00
IUUC-Cre-022663	Chlamydomonas reinhardtii	42.12	2.00e-98	351.00
IUUC-Csa-023429	Chlorocebus sabaeus	41.37	2.00e-104	372.00
IUUC-Cho-024347	Choloepus hoffmanni	41.57	7.00e-106	377.00
IUUC-Cin-025198	Ciona intestinalis	36.51	3.00e-82	298.00
IUUC-Csv-026007	Ciona savignyi	35.49	3.00e-82	298.00
IUUC-Cgl-026757	Colletotrichum gloeosporioides	42.86	4.00e-65	241.00
IUUC-Cne-026963	Cryptococcus neoformans	35.62	1.00e-75	276.00
IUUC-Cme-027240	Cyanidioschyzon merolae	35.43	2.00e-69	256.00
IUUC-Dre-027647	Danio rerio	41.85	8.00e-107	380.00
IUUC-Dno-029967	Dasypus novemcinctus	41.16	3.00e-104	371.00
IUUC-Dor-030886	Dipodomys ordii	35.41	2.00e-72	265.00
IUUC-Dse-031466	Dothistroma septosporum	37.85	3.00e-57	216.00
IUUC-Dme-032079	Drosophila melanogaster	37.53	1.00e-88	320.00
IUUC-Ete-032351	Echinops telfairi	40.33	4.00e-95	341.00
IUUC-Eca-033461	Equus caballus	41.63	7.00e-109	387.00
IUUC-Eeu-035220	Erinaceus europaeus	34.02	8.00e-46	177.00
IUUC-Fca-036210	Felis catus	41.57	7.00e-107	380.00
IUUC-Fal-037528	Ficedula albicollis	41.77	1.00e-103	369.00
IUUC-Fox-037805	Fusarium oxysporum	37.23	9.00e-86	310.00
IUUC-Fso-038177	Fusarium solani	37.92	7.00e-84	304.00
IUUC-Gmo-038953	Gadus morhua	40.36	2.00e-100	359.00
IUUC-Ggr-039972	Gaeumannomyces graminis	41.16	3.00e-64	239.00
IUUC-Gga-040462	Gallus gallus	41.20	3.00e-106	378.00
IUUC-Gac-041312	Gasterosteus aculeatus	41.05	8.00e-103	366.00
IUUC-Gma-043255	Glycine max	80.75	0.00e+00	785.00
IUUC-Ggo-045458	Gorilla gorilla	37.05	5.00e-83	301.00
IUUC-Hsa-045706	Homo sapiens	41.37	2.00e-104	372.00
IUUC-Hvu-047821	Hordeum vulgare	70.17	6.00e-101	359.00
IUUC-Itr-048654	Ictidomys tridecemlineatus	41.77	3.00e-105	374.00
IUUC-Lch-050464	Latimeria chalumnae	40.28	9.00e-105	373.00
IUUC-Lpe-051419	Leersia perrieri	70.25	0.00e+00	654.00
IUUC-Loc-052732	Lepisosteus oculatus	40.64	7.00e-107	380.00
IUUC-Lma-053177	Leptosphaeria maculans	41.83	2.00e-72	266.00
IUUC-Laf-053822	Loxodonta africana	41.57	2.00e-107	382.00
IUUC-Mcc-055893	Macaca mulatta	41.37	2.00e-104	372.00
IUUC-Meu-056307	Macropus eugenii	38.08	1.00e-94	340.00
IUUC-Mor-057171	Magnaporthe oryzae	42.03	3.00e-67	248.00
IUUC-Mpo-057415	Magnaporthe poae	42.86	1.00e-69	256.00
IUUC-Mtr-057901	Medicago truncatula	80.42	0.00e+00	772.00
IUUC-Mla-058897	Melampsora laricipopulina	40.79	4.00e-69	255.00
IUUC-Mga-060016	Meleagris gallopavo	41.00	2.00e-105	375.00
IUUC-Mvi-060562	Microbotryum violaceum	35.23	6.00e-57	214.00
IUUC-Mmr-060624	Microcebus murinus	41.77	9.00e-108	383.00
IUUC-Mdo-061809	Monodelphis domestica	40.35	2.00e-104	372.00
IUUC-Mmu-063869	Mus musculus	41.37	4.00e-106	377.00
IUUC-Mac-064876	Musa acuminata	72.08	0.00e+00	655.00
IUUC-Mpu-066480	Mustela putorius furo	41.57	2.00e-106	378.00
IUUC-Mlu-067866	Myotis lucifugus	41.57	8.00e-107	380.00
IUUC-Nfi-068393	Neosartorya fischeri	36.33	2.00e-78	286.00
IUUC-Ncr-068815	Neurospora crassa	37.52	2.00e-84	306.00
IUUC-Nle-070121	Nomascus leucogenys	46.30	1.00e-54	206.00
IUUC-Opr-070712	Ochotona princeps	30.95	3.00e-53	202.00
IUUC-Ont-071544	Oreochromis niloticus	40.84	3.00e-98	351.00
IUUC-Oan-073635	Ornithorhynchus anatinus	38.02	2.00e-78	285.00
IUUC-Ocu-074926	Oryctolagus cuniculus	41.45	4.00e-104	371.00
IUUC-Oba-075633	Oryza barthii	69.85	0.00e+00	646.00
IUUC-Obr-076423	Oryza brachyantha	71.93	0.00e+00	653.00
IUUC-Ogl-077913	Oryza glaberrima	72.56	0.00e+00	663.00
IUUC-Ogu-078435	Oryza glumaepatula	69.85	0.00e+00	646.00
IUUC-Oin-080072	Oryza indica	69.94	0.00e+00	645.00
IUUC-Olo-080535	Oryza longistaminata	64.20	5.00e-166	577.00
IUUC-Ome-081309	Oryza meridionalis	69.85	0.00e+00	646.00
IUUC-Oni-083113	Oryza nivara	69.85	0.00e+00	646.00
IUUC-Opu-083168	Oryza punctata	67.98	5.00e-178	616.00
IUUC-Oru-084253	Oryza rufipogon	69.85	0.00e+00	646.00
IUUC-Osa-085554	Oryza sativa	72.77	0.00e+00	666.00
IUUC-Ola-086998	Oryzias latipes	41.15	5.00e-101	360.00
IUUC-Olu-087818	Ostreococcus lucimarinus	42.01	4.00e-92	331.00
IUUC-Oga-088571	Otolemur garnettii	41.65	1.00e-105	375.00
IUUC-Oar-089526	Ovis aries	41.57	5.00e-106	377.00
IUUC-Ptr-091433	Pan troglodytes	41.37	2.00e-104	372.00
IUUC-Pan-091966	Papio anubis	41.37	2.00e-104	372.00
IUUC-Psi-093458	Pelodiscus sinensis	39.58	5.00e-96	344.00
IUUC-Pma-094343	Petromyzon marinus	41.67	5.00e-54	203.00
IUUC-Pno-095109	Phaeosphaeria nodorum	40.82	2.00e-66	246.00
IUUC-Ppa-095756	Physcomitrella patens	64.29	4.00e-176	610.00
IUUC-Pfo-096514	Poecilia formosa	40.72	2.00e-97	348.00
IUUC-Pab-098477	Pongo abelii	37.50	2.00e-75	275.00
IUUC-Pca-100791	Procavia capensis	32.79	4.00e-55	207.00
IUUC-Ppe-101812	Prunus persica	83.23	0.00e+00	764.00
IUUC-Pva-102462	Pteropus vampyrus	38.39	5.00e-80	290.00
IUUC-Pgr-103623	Puccinia graminis	44.07	1.00e-70	259.00
IUUC-Ptt-103767	Puccinia triticina	41.80	3.00e-64	238.00
IUUC-Pte-104109	Pyrenophora teres	34.35	3.00e-80	291.00
IUUC-Pyt-104766	Pyrenophora triticirepentis	34.64	4.00e-78	285.00
IUUC-Rno-105351	Rattus norvegicus	41.57	2.00e-104	372.00
IUUC-Sce-106168	Saccharomyces cerevisiae	34.55	1.00e-63	237.00
IUUC-Sha-107491	Sarcophilus harrisii	40.95	2.00e-105	375.00
IUUC-Sja-107769	Schizosaccharomyces japonicus	35.73	1.00e-74	273.00
IUUC-Spo-108174	Schizosaccharomyces pombe	38.57	2.00e-77	282.00
IUUC-Ssl-108659	Sclerotinia sclerotiorum	36.43	4.00e-81	295.00
IUUC-Smo-109276	Selaginella moellendorffii	66.46	0.00e+00	638.00
IUUC-Sit-110361	Setaria italica	72.50	0.00e+00	684.00
IUUC-Sly-110965	Solanum lycopersicum	80.12	0.00e+00	772.00
IUUC-Sar-113355	Sorex araneus	38.92	2.00e-58	219.00
IUUC-Sbi-114778	Sorghum bicolor	73.49	0.00e+00	680.00
IUUC-Sre-115011	Sporisorium reilianum	37.83	2.00e-64	239.00
IUUC-Ssc-116273	Sus scrofa	41.57	7.00e-105	373.00
IUUC-Tgu-117063	Taeniopygia guttata	41.97	5.00e-104	370.00
IUUC-Tru-118381	Takifugu rubripes	40.40	3.00e-97	348.00
IUUC-Tni-119941	Tetraodon nigroviridis	40.44	6.00e-94	337.00
IUUC-Tca-121246	Theobroma cacao	86.54	0.00e+00	814.00
IUUC-Tre-121969	Trichoderma reesei	41.05	2.00e-63	236.00
IUUC-Tvi-122543	Trichoderma virens	34.62	1.00e-76	280.00
IUUC-Tae-125484	Triticum aestivum	70.69	0.00e+00	664.00
IUUC-Tur-126128	Triticum urartu	56.07	2.00e-81	295.00
IUUC-Tbe-128030	Tupaia belangeri	37.04	9.00e-87	313.00
IUUC-Ttr-128701	Tursiops truncatus	38.57	8.00e-77	280.00
IUUC-Uma-129657	Ustilago maydis	30.86	5.00e-74	271.00
IUUC-Vda-129723	Verticillium dahliae	34.72	1.00e-72	266.00
IUUC-Vpa-130284	Vicugna pacos	28.24	6.00e-32	131.00
IUUC-Vvi-131037	Vitis vinifera	86.13	0.00e+00	827.00
IUUC-Xtr-132235	Xenopus tropicalis	41.57	4.00e-105	374.00
IUUC-Xma-133840	Xiphophorus maculatus	40.84	1.00e-100	360.00
IUUC-Yli-134453	Yarrowia lipolytica	37.99	1.00e-84	306.00
IUUC-Zma-135669	Zea mays	56.81	1.00e-165	575.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence