iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113801

UUCD1 version

UUC-SoB-00065

Ensembl Protein ID

Sb04g007340.1

UniProt Accession

A0A194YNJ6; A0A194YNJ6_SORBI

Genbank Protein ID

KXG29772.1

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G088500

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g007340	Sb04g007340.1	Sb04g007340.1
Sb04g007340	Sb04g007340.2	Sb04g007340.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-33	114.5	183	224
UBD/Beta-Prp	3.10e-66	224.4	14	288

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l++GsdD t kvWD+ t  ++++
   Q: 183  GHSKGVNCVDYftgGDrPYLITGSDDQTAKVWDYQTKSCVQT 224
           8********966*9778*******************999986 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
           +++++++v+ +p +++++++ ++g++ vw+++t+++++s++  + +v++ kf+ ++++ v g++D++i+v++++t + v ++++h+d++++++++p
   Q: 14   RSERVKSVDLHPTEPWILSSLYSGSVCVWNYQTQTMVKSFEVTDLPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP 109
           5678999***************************************************************************************** PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvs 197
           ++ +++s s+d  i++wd+++g++  ++++gh++ v+ v+++p++ n ++s+slDrt+++W+l + +   tl g h + v++++     ++++l++
   Q: 110  TQPFVLSSSDDMLIKLWDWDKGWVCTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTIKIWSLGSPDPNFTLDG-HSKGVNCVDyfTGGDRPYLIT 204
           ***********************9999**********************************************9.*********7445566***** PP
   S: 198  gsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlv 281
           gs+d+t k+wd+qt++cv+tl+gh  nv+ v f+p+  ++++gs+Dg++r+W +++  l +tl++  ++v++  +++ +++v++
   Q: 205  GSDDQTAKVWDYQTKSCVQTLEGHAHNVSAVCFHPELPIIITGSEDGTVRMWHSTTYRLENTLNYGLERVWALGYMKGSRRVVI 288
           ***********************************************************************9998666666654 PP

Organism

Sorghum bicolor

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MPLRLDIKRK LAQRSERVKS VDLHPTEPWI LSSLYSGSVC VWNYQTQTMV KSFEVTDLPV 60
RSAKFIARKQ WVVAGADDMF IRVYNYNTMD KVKVFEAHTD YIRCVAVHPT QPFVLSSSDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTAGCCCGT TTTCTACCTC TCCACTCCCC TCTCCACCGG AATCGTCTCC CCACGCAGGC 60
CCGCACTCGC AAATCTCCTC CCCTCTCCCC GCGCGGCGCG CCTGCACCTC CCGGTCCGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	72.41	0.00e+00	1380.00
IUUC-Atr-003090	Amborella trichopoda	77.18	0.00e+00	1460.00
IUUC-Aca-004301	Anolis carolinensis	61.49	0.00e+00	1120.00
IUUC-Aly-006508	Arabidopsis lyrata	79.32	0.00e+00	1502.00
IUUC-Ath-007630	Arabidopsis thaliana	78.80	0.00e+00	1502.00
IUUC-Afl-008535	Aspergillus flavus	51.55	0.00e+00	863.00
IUUC-Afu-008845	Aspergillus fumigatus	52.05	0.00e+00	903.00
IUUC-Aor-009939	Aspergillus oryzae	52.43	0.00e+00	926.00
IUUC-Bci-013866	Botrytis cinerea	51.67	0.00e+00	894.00
IUUC-Bdi-015046	Brachypodium distachyon	88.83	0.00e+00	1662.00
IUUC-Bol-016271	Brassica oleracea	79.54	0.00e+00	1510.00
IUUC-Bra-017758	Brassica rapa	77.78	0.00e+00	1491.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	66.99	0.00e+00	1116.00
IUUC-Cme-027219	Cyanidioschyzon merolae	51.50	0.00e+00	885.00
IUUC-Gga-041112	Gallus gallus	60.64	0.00e+00	1127.00
IUUC-Gma-044333	Glycine max	83.35	0.00e+00	1575.00
IUUC-Hvu-047669	Hordeum vulgare	96.33	0.00e+00	729.00
IUUC-Lpe-051579	Leersia perrieri	88.38	0.00e+00	1644.00
IUUC-Mtr-058618	Medicago truncatula	82.93	0.00e+00	1536.00
IUUC-Mga-059875	Meleagris gallopavo	60.39	0.00e+00	1122.00
IUUC-Mdo-062076	Monodelphis domestica	61.66	0.00e+00	1120.00
IUUC-Mac-064636	Musa acuminata	81.92	0.00e+00	1561.00
IUUC-Nfi-068277	Neosartorya fischeri	52.00	0.00e+00	893.00
IUUC-Oba-075751	Oryza barthii	84.70	0.00e+00	1576.00
IUUC-Obr-076201	Oryza brachyantha	89.58	0.00e+00	1684.00
IUUC-Ogl-077450	Oryza glaberrima	85.47	0.00e+00	1545.00
IUUC-Ogu-078994	Oryza glumaepatula	84.53	0.00e+00	1517.00
IUUC-Oin-079856	Oryza indica	89.50	0.00e+00	1662.00
IUUC-Olo-080731	Oryza longistaminata	83.43	0.00e+00	1498.00
IUUC-Ome-081554	Oryza meridionalis	85.14	0.00e+00	1559.00
IUUC-Oni-082324	Oryza nivara	84.53	0.00e+00	1518.00
IUUC-Opu-083400	Oryza punctata	86.77	0.00e+00	1647.00
IUUC-Oru-085196	Oryza rufipogon	87.45	0.00e+00	1618.00
IUUC-Osa-086026	Oryza sativa	82.07	0.00e+00	1554.00
IUUC-Psi-093308	Pelodiscus sinensis	61.73	0.00e+00	1119.00
IUUC-Pop-099634	Populus trichocarpa	82.32	0.00e+00	1536.00
IUUC-Ppe-101470	Prunus persica	83.30	0.00e+00	1575.00
IUUC-Pgr-103453	Puccinia graminis	53.36	0.00e+00	909.00
IUUC-Ptt-103868	Puccinia triticina	53.24	0.00e+00	906.00
IUUC-Sha-106905	Sarcophilus harrisii	61.66	0.00e+00	1120.00
IUUC-Sit-110692	Setaria italica	96.07	0.00e+00	1695.00
IUUC-Sly-111211	Solanum lycopersicum	81.53	0.00e+00	1489.00
IUUC-Stu-112906	Solanum tuberosum	80.66	0.00e+00	1384.00
IUUC-Tca-121613	Theobroma cacao	82.84	0.00e+00	1584.00
IUUC-Tae-125385	Triticum aestivum	89.34	0.00e+00	1650.00
IUUC-Tur-126283	Triticum urartu	73.27	0.00e+00	1382.00
IUUC-Vvi-131689	Vitis vinifera	85.80	0.00e+00	1546.00
IUUC-Xtr-132633	Xenopus tropicalis	62.95	0.00e+00	1118.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence