iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114699

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000761

Gene Name

SORBI_002G181400

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb02g022980	Sb02g022980.1	Sb02g022980.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.50e-20	71.4	209	247

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+d  +++a   s++ +v+Gs Dgt ++WD r+g++ +
   Q: 209  GHADYLHSVAVreSNRQVVTGSEDGTARIWDCRSGKCMQ 247
           8**********997799*******************987 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MAAAAAQSHP ASMDARGWDE ASYRRGILRA RDLSSRTLFR AVFFDHSDDP DPDVLLAAAS 60
SDGSLASFSL STCISAGSAA SQVETAAVLV DPVCIVQAHS GPAYDVRFYP DPQQPLLFSC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGGCGG CGGCGGCGCA ATCTCATCCG GCGTCAATGG ACGCGCGAGG GTGGGACGAG 60
GCATCCTACC GCCGCGGCAT CCTCCGTGCC CGCGACCTCT CGTCCCGCAC CCTCTTCCGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0000347--C:THO complex
GO:0009788--P:negative regulation of abscisic acid-activated signaling pathway
GO:0010267--P:production of ta-siRNAs involved in RNA interference
GO:0016567--P:protein ubiquitination

KEGG

sbi:SORBI_02g022980

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001101	Aegilops tauschii	80.64	6.00e-168	582.00
IUUC-Aml-001693	Ailuropoda melanoleuca	28.75	8.00e-28	116.00
IUUC-Atr-002699	Amborella trichopoda	52.41	7.00e-99	352.00
IUUC-Aca-004231	Anolis carolinensis	31.03	4.00e-34	137.00
IUUC-Aly-006385	Arabidopsis lyrata	52.32	2.00e-106	378.00
IUUC-Ath-006723	Arabidopsis thaliana	52.32	9.00e-106	375.00
IUUC-Ame-010813	Astyanax mexicanus	28.74	3.00e-23	100.00
IUUC-Bta-013458	Bos taurus	28.34	6.00e-27	114.00
IUUC-Bdi-014935	Brachypodium distachyon	85.22	1.00e-171	594.00
IUUC-Bol-015442	Brassica oleracea	51.33	1.00e-103	369.00
IUUC-Bra-017807	Brassica rapa	52.20	5.00e-111	393.00
IUUC-Cja-019061	Callithrix jacchus	30.36	2.00e-28	118.00
IUUC-Cfa-021146	Canis familiaris	27.87	4.00e-28	117.00
IUUC-Cpo-022512	Cavia porcellus	29.15	5.00e-28	117.00
IUUC-Csa-023055	Chlorocebus sabaeus	29.84	2.00e-29	121.00
IUUC-Cho-024693	Choloepus hoffmanni	32.28	9.00e-19	85.50
IUUC-Cin-025181	Ciona intestinalis	30.23	1.00e-34	139.00
IUUC-Csv-025852	Ciona savignyi	28.57	4.00e-31	127.00
IUUC-Dre-028221	Danio rerio	30.12	6.00e-32	130.00
IUUC-Dno-029200	Dasypus novemcinctus	32.67	4.00e-17	80.10
IUUC-Dor-030863	Dipodomys ordii	27.95	3.00e-28	118.00
IUUC-Dme-032016	Drosophila melanogaster	24.81	2.00e-19	88.60
IUUC-Eca-034363	Equus caballus	29.15	6.00e-28	117.00
IUUC-Fca-036546	Felis catus	29.55	6.00e-28	117.00
IUUC-Gmo-038513	Gadus morhua	29.80	4.00e-26	110.00
IUUC-Gac-042606	Gasterosteus aculeatus	29.55	7.00e-34	136.00
IUUC-Gma-042881	Glycine max	55.46	2.00e-117	414.00
IUUC-Ggo-044877	Gorilla gorilla	29.55	1.00e-28	119.00
IUUC-Hsa-045813	Homo sapiens	29.55	1.00e-28	119.00
IUUC-Hvu-047782	Hordeum vulgare	80.63	5.00e-89	318.00
IUUC-Itr-047876	Ictidomys tridecemlineatus	27.87	1.00e-27	115.00
IUUC-Lch-049506	Latimeria chalumnae	29.90	5.00e-34	137.00
IUUC-Lpe-051203	Leersia perrieri	78.99	1.00e-159	554.00
IUUC-Loc-052451	Lepisosteus oculatus	32.68	1.00e-30	125.00
IUUC-Laf-053864	Loxodonta africana	29.96	3.00e-29	121.00
IUUC-Mcc-055705	Macaca mulatta	26.67	6.00e-26	110.00
IUUC-Meu-055926	Macropus eugenii	29.96	2.00e-27	115.00
IUUC-Mtr-058556	Medicago truncatula	55.16	1.00e-121	428.00
IUUC-Mmr-060836	Microcebus murinus	29.55	4.00e-28	117.00
IUUC-Mdo-062534	Monodelphis domestica	28.97	8.00e-27	113.00
IUUC-Mmu-063560	Mus musculus	29.15	1.00e-27	115.00
IUUC-Mac-065134	Musa acuminata	60.87	3.00e-127	447.00
IUUC-Mpu-066031	Mustela putorius furo	29.15	6.00e-28	117.00
IUUC-Mlu-068051	Myotis lucifugus	29.03	1.00e-28	119.00
IUUC-Nle-069080	Nomascus leucogenys	29.55	2.00e-28	119.00
IUUC-Opr-070787	Ochotona princeps	28.74	5.00e-28	117.00
IUUC-Ont-071952	Oreochromis niloticus	32.53	4.00e-34	138.00
IUUC-Oan-073334	Ornithorhynchus anatinus	28.95	4.00e-21	94.00
IUUC-Oba-075175	Oryza barthii	81.18	2.00e-166	577.00
IUUC-Obr-076393	Oryza brachyantha	86.06	7.00e-170	588.00
IUUC-Ogl-077603	Oryza glaberrima	77.86	2.00e-109	387.00
IUUC-Ogu-078211	Oryza glumaepatula	80.91	2.00e-161	560.00
IUUC-Oin-079554	Oryza indica	88.26	5.00e-152	529.00
IUUC-Olo-080922	Oryza longistaminata	74.13	3.00e-117	414.00
IUUC-Ome-081127	Oryza meridionalis	72.75	1.00e-136	478.00
IUUC-Oni-082376	Oryza nivara	81.18	1.00e-161	561.00
IUUC-Opu-083163	Oryza punctata	79.47	7.00e-164	568.00
IUUC-Oru-084311	Oryza rufipogon	81.18	1.00e-161	561.00
IUUC-Osa-085762	Oryza sativa	77.86	2.00e-104	371.00
IUUC-Oga-088804	Otolemur garnettii	27.53	5.00e-28	117.00
IUUC-Oar-090095	Ovis aries	27.53	4.00e-26	111.00
IUUC-Ptr-090731	Pan troglodytes	29.55	1.00e-28	119.00
IUUC-Pan-092595	Papio anubis	29.88	4.00e-29	120.00
IUUC-Psi-093866	Pelodiscus sinensis	30.83	8.00e-33	133.00
IUUC-Pma-094236	Petromyzon marinus	27.66	2.00e-31	128.00
IUUC-Pfo-096095	Poecilia formosa	30.24	3.00e-32	131.00
IUUC-Pab-098385	Pongo abelii	29.55	1.00e-28	119.00
IUUC-Pop-099433	Populus trichocarpa	57.97	5.00e-121	426.00
IUUC-Pca-101119	Procavia capensis	30.59	5.00e-25	107.00
IUUC-Ppe-101677	Prunus persica	58.42	2.00e-128	451.00
IUUC-Pva-102726	Pteropus vampyrus	29.69	2.00e-30	125.00
IUUC-Rno-105576	Rattus norvegicus	28.74	6.00e-27	113.00
IUUC-Sha-106774	Sarcophilus harrisii	29.55	1.00e-26	112.00
IUUC-Sit-109988	Setaria italica	92.39	0.00e+00	671.00
IUUC-Sly-110864	Solanum lycopersicum	53.27	5.00e-92	330.00
IUUC-Sar-113060	Sorex araneus	27.02	3.00e-24	104.00
IUUC-Ssc-116445	Sus scrofa	28.34	1.00e-27	115.00
IUUC-Tru-117834	Takifugu rubripes	28.23	2.00e-31	128.00
IUUC-Tni-119651	Tetraodon nigroviridis	29.66	2.00e-32	132.00
IUUC-Tca-121318	Theobroma cacao	55.31	4.00e-120	423.00
IUUC-Tae-124184	Triticum aestivum	80.64	5.00e-168	582.00
IUUC-Tur-126226	Triticum urartu	76.56	3.00e-121	427.00
IUUC-Tbe-128079	Tupaia belangeri	27.14	6.00e-12	63.50
IUUC-Ttr-128391	Tursiops truncatus	26.61	2.00e-22	99.40
IUUC-Vvi-131148	Vitis vinifera	60.65	2.00e-117	414.00
IUUC-Xtr-132743	Xenopus tropicalis	30.24	1.00e-32	132.00
IUUC-Xma-133722	Xiphophorus maculatus	29.88	2.00e-35	142.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence