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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-006801
UUCD1 version UUC-ArT-00242
Ensembl Protein ID AT5G49430.1
UniProt Accession F4K639; F4K639_ARATH
Genbank Protein ID AED95810.1; ANM70775.1
Protein Name WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein
Genbank Nucleotide ID CP002688; CP002688
Gene Name At5g49430; K7J8.10; K7J8_10
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G49430 AT5G49430.1 AT5G49430.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.30e-24 86.1 327 360
UBD/Beta-Prp 4.10e-42 145.3 238 500
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf...sd..tllvsGsdDgtikvWD 29
           gHt+ vt++af   ++    l+s+sdDgt+++WD
   Q: 327  GHTGAVTAIAFsprPGspYQLLSSSDDGTCRIWD 360
           8************9555356************** PP
   

   UBD/Beta-Prp
   S: 2    iktlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvls 99
           ik l+gh+ +v +++   +++++++tgs+d+ +kvw+++t  +l+s  ghe+ +t++  s++  +++++s+D +i+vw l +g +v++l+gh+  v++
   Q: 238  IKRLRGHRNAVYCAIL-DRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNIFIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTA 334
           5678889998888655.59*******************************************99********************************** PP
   S: 100  lsfsp...sgdklvsGshdrtirvwdletgqclee..................tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl.......... 166
           ++fsp   s + l+s s+d t r+wd +  q                       ++++++ + c +++ +g+++v+Gs D+  r++++          
   Q: 335  IAFSPrpgSPYQLLSSSDDGTCRIWDARGAQFAPRiyvprppspdgknsgpssSNAQQSHQIFCCAFNASGSVFVTGSSDTLARVYSVwsanktntdd 432
           *****98777**********************999******************9999999*****************************999999998 PP
   S: 167  ..ktgkllrtltgghtdsvyslsfdsng..........................kelvsgsldgtvklw 207
             + +  ++ l g h+++v+ ++f+                               +v++s+dg+ ++w
   Q: 433  peQPNHEMDVLAG-HENDVNYVQFSGCAagskfsvtdyskdenvpkfknswfchDNIVTCSRDGSAIIW 500
           8544555555566.*********665555566666666677799999999***99************** PP
   
Organism Arabidopsis thaliana
Protein Sequence
(Fasta)
MALRKNTPKG DSVSLPMKPL NFSRKLPGNV QIPDPDIVQS VAPNIDLDLR EVYFLMLHLL 60
SSGPCQKTYA LLRHELLEHE LLPRRYHAWY SRSGLPSGDE NDDGNSFPLN YTELAKRYSH 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006801|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TTTTTTTGCG TTGTGCTCTG TTTCTTCCCT TCTCTCTCTA TCCAGTGCGT TTCTCCACAA 60
TCCTTTCGCC TTCTTCTGCC GAAATTTTGT CTTGCCCAAA AAACACTAAA AAACCGAATA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006801|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat
Interpro

IPR001487--Bromodomain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS50014--BROMODOMAIN_2
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00439--Bromodomain
PF00400--WD40
SMART

SM00297--BROMO
SM00320--WD40
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005634--C:nucleus
GO:0007010--P:cytoskeleton organization
GO:0008360--P:regulation of cell shape
GO:0006357--P:regulation of transcription from RNA polymerase II promoter
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001113 Aegilops tauschii 55.69 0.00e+00 866.00
IUUC-Aml-002299 Ailuropoda melanoleuca 32.25 5.00e-73 269.00
IUUC-Atr-002600 Amborella trichopoda 68.50 0.00e+00 1093.00
IUUC-Apl-003700 Anas platyrhynchos 31.52 2.00e-65 244.00
IUUC-Aca-004474 Anolis carolinensis 32.78 2.00e-80 294.00
IUUC-Aly-006406 Arabidopsis lyrata 97.29 0.00e+00 2914.00
IUUC-Ame-010718 Astyanax mexicanus 30.94 5.00e-81 296.00
IUUC-Bdi-014797 Brachypodium distachyon 52.86 0.00e+00 776.00
IUUC-Bol-015737 Brassica oleracea 86.60 0.00e+00 2586.00
IUUC-Bra-017961 Brassica rapa 86.54 0.00e+00 2580.00
IUUC-Cja-018868 Callithrix jacchus 32.84 4.00e-81 296.00
IUUC-Cre-023003 Chlamydomonas reinhardtii 33.44 5.00e-33 135.00
IUUC-Csa-023618 Chlorocebus sabaeus 32.69 9.00e-81 295.00
IUUC-Cho-024690 Choloepus hoffmanni 28.57 1.00e-35 145.00
IUUC-Csv-025813 Ciona savignyi 27.16 1.00e-58 220.00
IUUC-Dre-028205 Danio rerio 32.54 4.00e-81 296.00
IUUC-Dno-030048 Dasypus novemcinctus 32.56 4.00e-73 270.00
IUUC-Dor-030195 Dipodomys ordii 35.52 2.00e-32 134.00
IUUC-Eeu-034688 Erinaceus europaeus 33.06 1.00e-38 155.00
IUUC-Gmo-039116 Gadus morhua 28.89 2.00e-22 102.00
IUUC-Gac-042435 Gasterosteus aculeatus 30.64 6.00e-62 233.00
IUUC-Gma-043340 Glycine max 56.52 0.00e+00 1680.00
IUUC-Itr-047962 Ictidomys tridecemlineatus 27.30 1.00e-22 100.00
IUUC-Lch-049662 Latimeria chalumnae 31.36 2.00e-78 287.00
IUUC-Lpe-051619 Leersia perrieri 49.82 0.00e+00 1315.00
IUUC-Loc-052672 Lepisosteus oculatus 32.69 3.00e-79 290.00
IUUC-Meu-056321 Macropus eugenii 29.47 2.00e-54 208.00
IUUC-Mtr-058094 Medicago truncatula 56.65 0.00e+00 1625.00
IUUC-Mlu-067928 Myotis lucifugus 32.20 5.00e-73 269.00
IUUC-Ont-072221 Oreochromis niloticus 33.53 1.00e-80 295.00
IUUC-Oba-075709 Oryza barthii 50.57 0.00e+00 1382.00
IUUC-Obr-076619 Oryza brachyantha 50.23 0.00e+00 1404.00
IUUC-Ogl-077493 Oryza glaberrima 48.40 0.00e+00 1134.00
IUUC-Ogu-078641 Oryza glumaepatula 47.32 0.00e+00 984.00
IUUC-Oin-079669 Oryza indica 69.27 0.00e+00 700.00
IUUC-Olo-080755 Oryza longistaminata 48.29 0.00e+00 1093.00
IUUC-Oni-082991 Oryza nivara 47.28 0.00e+00 1073.00
IUUC-Opu-083233 Oryza punctata 50.63 0.00e+00 1406.00
IUUC-Oru-085195 Oryza rufipogon 50.46 0.00e+00 1384.00
IUUC-Ola-086648 Oryzias latipes 33.53 5.00e-81 296.00
IUUC-Oga-088578 Otolemur garnettii 32.84 2.00e-70 261.00
IUUC-Oar-090214 Ovis aries 31.14 7.00e-69 256.00
IUUC-Pma-094427 Petromyzon marinus 31.71 3.00e-37 148.00
IUUC-Pfo-096191 Poecilia formosa 33.13 2.00e-80 294.00
IUUC-Pab-098402 Pongo abelii 32.69 8.00e-81 295.00
IUUC-Pop-099185 Populus trichocarpa 58.10 0.00e+00 1722.00
IUUC-Pca-101128 Procavia capensis 31.80 1.00e-66 248.00
IUUC-Ppe-101849 Prunus persica 55.07 0.00e+00 1671.00
IUUC-Sar-113004 Sorex araneus 31.04 1.00e-65 245.00
IUUC-Ssc-115461 Sus scrofa 31.68 2.00e-71 264.00
IUUC-Tru-117625 Takifugu rubripes 33.84 4.00e-80 293.00
IUUC-Tni-120716 Tetraodon nigroviridis 33.23 1.00e-80 295.00
IUUC-Tca-121098 Theobroma cacao 57.60 0.00e+00 1753.00
IUUC-Tae-125478 Triticum aestivum 63.88 0.00e+00 1029.00
IUUC-Tur-126809 Triticum urartu 61.73 0.00e+00 1014.00
IUUC-Tbe-127479 Tupaia belangeri 44.14 3.00e-30 127.00
IUUC-Ttr-128427 Tursiops truncatus 32.58 1.00e-72 268.00
IUUC-Vpa-130160 Vicugna pacos 32.62 2.00e-71 264.00
IUUC-Vvi-131362 Vitis vinifera 58.78 0.00e+00 1759.00
IUUC-Xtr-132717 Xenopus tropicalis 32.59 3.00e-81 297.00
IUUC-Xma-134120 Xiphophorus maculatus 33.59 1.00e-81 296.00
Created Date 25-Jun-2017

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