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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-006718
Ensembl Protein ID AT3G61113.1
UniProt Accession B3H7G2; URM12_ARATH
Genbank Protein ID AEE80156.1
Protein Name Ubiquitin-related modifier 1 homolog 2
Genbank Nucleotide ID AL137898
Gene Name URM1-2; At3g61113; T20K12
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G61113 AT3G61113.1 AT3G61113.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
Protein Expression/Proteomics
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
ULD/UDP/UBQ/UBQ_Other 39.76 8.00e-14 69.70 IUUC-Sce-106366
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically induces the formation of UBL-protein conjugates.
 Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically induces the formation of UBL-protein conjugates.
Protein Sequence
(Fasta)
MQFTLEFGGG LELLCDSVKI HKVNINLLND SDILTMKDLL SWVRTNLIKE RPEMFMKGDT 60
VRPGVLVLVN DCDWELSGQL DTTLEDKDVI VFISTLHGG 99
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Protein Fasta Sequence


>IUUC-Ath-006718|ULD,UBQ_Other|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
ATTTGGTGAT CATGTTGCCT AACTTTAAGG GCCCAAACCA AGAAAACGAA AACGACGTCG 60
TATGGAGTTT TGCGTGAACT CAAAGCGGAG ATCCTATCGG AGAGAATCGG AGAAGAAGAA 120
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Nucleotide Fasta Sequence


>IUUC-Ath-006718|ULD,UBQ_Other|Arabidopsis thaliana
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Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-1185--Reference proteome
KW-0819--tRNA processing
KW-0833--Ubl conjugation pathway
Interpro

IPR012675--Beta-grasp_dom
IPR016155--Mopterin_synth/thiamin_S_b
IPR015221--Urm1
Pfam

PF09138--Urm1
Gene Ontology

GO:0005737--C:cytoplasm
GO:0034227--P:tRNA thio-modification
KEGG ath:AT3G61113
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002254 Ailuropoda melanoleuca 54.55 1.00e-28 117.00
IUUC-Atr-003089 Amborella trichopoda 70.71 3.00e-38 148.00
IUUC-Apl-003382 Anas platyrhynchos 56.99 4.00e-28 115.00
IUUC-Aca-004981 Anolis carolinensis 55.67 1.00e-28 116.00
IUUC-Aly-005517 Arabidopsis lyrata 94.57 1.00e-46 176.00
IUUC-Ago-007917 Ashbya gossypii 39.60 2.00e-19 85.90
IUUC-Acl-008054 Aspergillus clavatus 56.00 8.00e-13 63.90
IUUC-Afl-008704 Aspergillus flavus 44.94 9.00e-16 73.60
IUUC-Aor-009890 Aspergillus oryzae 46.53 8.00e-20 88.20
IUUC-Bta-012448 Bos taurus 55.56 9.00e-29 117.00
IUUC-Bci-013865 Botrytis cinerea 38.61 8.00e-16 74.30
IUUC-Bdi-014980 Brachypodium distachyon 69.77 5.00e-30 121.00
IUUC-Bol-016055 Brassica oleracea 85.88 7.00e-39 150.00
IUUC-Bra-016845 Brassica rapa 85.88 7.00e-39 150.00
IUUC-Cel-018485 Caenorhabditis elegans 42.00 5.00e-12 61.60
IUUC-Cja-019587 Callithrix jacchus 54.55 1.00e-28 117.00
IUUC-Cfa-020653 Canis familiaris 56.57 6.00e-29 117.00
IUUC-Cpo-021622 Cavia porcellus 54.55 1.00e-28 117.00
IUUC-Cre-023015 Chlamydomonas reinhardtii 53.54 2.00e-28 115.00
IUUC-Csa-023756 Chlorocebus sabaeus 51.32 7.00e-20 89.00
IUUC-Cgl-026518 Colletotrichum gloeosporioides 37.62 5.00e-15 72.00
IUUC-Cne-026953 Cryptococcus neoformans 49.51 9.00e-25 105.00
IUUC-Cme-027314 Cyanidioschyzon merolae 49.48 3.00e-20 89.00
IUUC-Dre-027884 Danio rerio 65.26 6.00e-32 127.00
IUUC-Dno-029262 Dasypus novemcinctus 52.00 6.00e-19 85.90
IUUC-Dor-030601 Dipodomys ordii 54.69 1.00e-15 73.60
IUUC-Dme-031893 Drosophila melanogaster 49.49 1.00e-24 103.00
IUUC-Ete-032773 Echinops telfairi 53.68 1.00e-26 110.00
IUUC-Eca-034187 Equus caballus 55.56 6.00e-29 117.00
IUUC-Eeu-034808 Erinaceus europaeus 53.54 4.00e-28 115.00
IUUC-Fca-036107 Felis catus 55.56 1.00e-28 117.00
IUUC-Fal-036607 Ficedula albicollis 53.76 1.00e-26 110.00
IUUC-Fox-037698 Fusarium oxysporum 35.64 7.00e-14 68.20
IUUC-Gmo-039492 Gadus morhua 62.11 1.00e-29 120.00
IUUC-Ggr-039965 Gaeumannomyces graminis 37.11 1.00e-13 67.80
IUUC-Gga-041268 Gallus gallus 55.67 3.00e-29 119.00
IUUC-Gac-042111 Gasterosteus aculeatus 57.89 4.00e-29 118.00
IUUC-Gma-043240 Glycine max 84.71 7.00e-38 147.00
IUUC-Ggo-045176 Gorilla gorilla 51.32 3.00e-14 70.10
IUUC-Hsa-046077 Homo sapiens 53.54 6.00e-23 97.80
IUUC-Itr-048111 Ictidomys tridecemlineatus 56.04 6.00e-21 90.90
IUUC-Kpa-049157 Komagataella pastoris 38.61 6.00e-16 74.30
IUUC-Lch-049889 Latimeria chalumnae 56.57 4.00e-28 115.00
IUUC-Lpe-050783 Leersia perrieri 68.29 1.00e-30 123.00
IUUC-Loc-052400 Lepisosteus oculatus 61.05 1.00e-29 120.00
IUUC-Lma-053259 Leptosphaeria maculans 38.78 1.00e-13 67.40
IUUC-Laf-053596 Loxodonta africana 52.48 4.00e-27 111.00
IUUC-Mcc-054845 Macaca mulatta 54.44 9.00e-26 107.00
IUUC-Meu-055968 Macropus eugenii 58.33 1.00e-29 120.00
IUUC-Mor-057126 Magnaporthe oryzae 33.66 1.00e-11 60.80
IUUC-Mpo-057311 Magnaporthe poae 35.92 9.00e-14 68.60
IUUC-Mtr-058266 Medicago truncatula 82.76 4.00e-37 144.00
IUUC-Mla-058847 Melampsora laricipopulina 32.38 9.00e-08 48.10
IUUC-Mga-059468 Meleagris gallopavo 55.91 1.00e-27 113.00
IUUC-Mvi-060235 Microbotryum violaceum 34.46 2.00e-16 77.80
IUUC-Mdo-061948 Monodelphis domestica 58.33 1.00e-29 120.00
IUUC-Mmu-063946 Mus musculus 57.89 1.00e-28 116.00
IUUC-Mac-064812 Musa acuminata 71.76 3.00e-32 129.00
IUUC-Mpu-066763 Mustela putorius furo 56.57 1.00e-29 119.00
IUUC-Mlu-066970 Myotis lucifugus 52.63 6.00e-20 87.80
IUUC-Ncr-068824 Neurospora crassa 37.76 5.00e-14 68.60
IUUC-Nle-069849 Nomascus leucogenys 51.32 5.00e-20 89.40
IUUC-Opr-070227 Ochotona princeps 54.55 1.00e-28 117.00
IUUC-Ont-072530 Oreochromis niloticus 61.05 7.00e-30 120.00
IUUC-Oan-073191 Ornithorhynchus anatinus 57.14 4.00e-26 108.00
IUUC-Ocu-074460 Oryctolagus cuniculus 56.57 9.00e-29 117.00
IUUC-Oba-075499 Oryza barthii 67.47 1.00e-29 121.00
IUUC-Obr-076896 Oryza brachyantha 66.27 5.00e-29 120.00
IUUC-Ogl-077834 Oryza glaberrima 67.47 7.00e-30 120.00
IUUC-Ogu-078622 Oryza glumaepatula 67.47 7.00e-30 120.00
IUUC-Oin-079358 Oryza indica 67.47 1.00e-29 122.00
IUUC-Olo-081035 Oryza longistaminata 65.62 5.00e-32 129.00
IUUC-Oni-082425 Oryza nivara 67.47 7.00e-30 120.00
IUUC-Opu-083461 Oryza punctata 67.07 4.00e-29 119.00
IUUC-Oru-084875 Oryza rufipogon 71.83 2.00e-25 106.00
IUUC-Oga-089128 Otolemur garnettii 55.56 5.00e-29 118.00
IUUC-Oar-089896 Ovis aries 55.56 9.00e-29 117.00
IUUC-Ptr-091618 Pan troglodytes 51.32 3.00e-14 70.10
IUUC-Pan-092238 Papio anubis 51.32 7.00e-20 89.00
IUUC-Psi-093879 Pelodiscus sinensis 54.55 4.00e-29 118.00
IUUC-Pma-094484 Petromyzon marinus 56.79 5.00e-23 98.20
IUUC-Ppa-095801 Physcomitrella patens 60.24 9.00e-26 107.00
IUUC-Pfo-097192 Poecilia formosa 63.16 5.00e-30 121.00
IUUC-Pab-098203 Pongo abelii 55.79 8.00e-23 97.40
IUUC-Pop-099614 Populus trichocarpa 80.00 4.00e-36 141.00
IUUC-Pca-100507 Procavia capensis 53.95 4.00e-20 88.20
IUUC-Ppe-101174 Prunus persica 82.83 9.00e-46 173.00
IUUC-Pva-102735 Pteropus vampyrus 53.54 9.00e-26 107.00
IUUC-Pgr-103510 Puccinia graminis 36.54 2.00e-08 50.10
IUUC-Ptt-103918 Puccinia triticina 33.66 2.00e-08 50.10
IUUC-Pte-104173 Pyrenophora teres 39.60 2.00e-16 76.60
IUUC-Pyt-104806 Pyrenophora triticirepentis 39.60 2.00e-16 76.30
IUUC-Rno-105820 Rattus norvegicus 58.95 3.00e-29 118.00
IUUC-Sce-106366 Saccharomyces cerevisiae 39.18 8.00e-17 77.80
IUUC-Sja-107727 Schizosaccharomyces japonicus 40.40 5.00e-13 65.50
IUUC-Spo-108074 Schizosaccharomyces pombe 38.24 3.00e-10 55.80
IUUC-Smo-108944 Selaginella moellendorffii 61.54 1.00e-27 113.00
IUUC-Sit-110277 Setaria italica 67.86 3.00e-31 125.00
IUUC-Sly-111505 Solanum lycopersicum 75.29 3.00e-34 135.00
IUUC-Stu-112076 Solanum tuberosum 75.29 2.00e-34 136.00
IUUC-Sbi-114274 Sorghum bicolor 65.26 4.00e-30 122.00
IUUC-Sre-114953 Sporisorium reilianum 48.04 1.00e-21 93.60
IUUC-Ssc-115418 Sus scrofa 55.56 1.00e-28 117.00
IUUC-Tgu-117311 Taeniopygia guttata 52.69 3.00e-26 108.00
IUUC-Tru-118598 Takifugu rubripes 57.14 2.00e-26 109.00
IUUC-Tni-120109 Tetraodon nigroviridis 56.25 7.00e-26 107.00
IUUC-Tca-120942 Theobroma cacao 80.72 6.00e-36 140.00
IUUC-Tre-122099 Trichoderma reesei 39.78 2.00e-10 56.20
IUUC-Tvi-122285 Trichoderma virens 39.60 8.00e-13 64.70
IUUC-Tae-125193 Triticum aestivum 69.88 4.00e-31 124.00
IUUC-Tur-126677 Triticum urartu 62.11 1.00e-28 117.00
IUUC-Tme-127120 Tuber melanosporum 38.61 3.00e-16 76.30
IUUC-Tbe-128050 Tupaia belangeri 42.11 5.00e-15 71.60
IUUC-Ttr-129019 Tursiops truncatus 55.56 3.00e-29 118.00
IUUC-Uma-129483 Ustilago maydis 48.04 2.00e-20 90.10
IUUC-Vda-129690 Verticillium dahliae 60.53 3.00e-09 53.10
IUUC-Vvi-131174 Vitis vinifera 84.34 1.00e-36 143.00
IUUC-Xma-133862 Xiphophorus maculatus 63.16 5.00e-30 121.00
IUUC-Yli-134398 Yarrowia lipolytica 41.41 5.00e-17 78.20
IUUC-Zma-134964 Zea mays 68.24 2.00e-29 119.00
Created Date 25-Jun-2017

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