iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-016944

Ensembl Protein ID

Bra037118.1-P

UniProt Accession

M4F7Q7; M4F7Q7_BRARP

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra037118	Bra037118.1	Bra037118.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.50e-51	169.3	445	481
UBD/Beta-Prp	1.30e-80	271.8	319	611

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gH+++v+c+++ ++ tll+s+sdD t k+W++++++ 
   Q: 445  GHQGEVNCVKWdPTgTLLASCSDDSTAKIWNIKQHNF 481
           8***********888****************988765 PP

UBD/Beta-Prp

   S: 5    lkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsl 100
           ++++ k+v t +++  +++llatgs dg  ++w +  g+l+++ls+h++++ ++k++++g++l+tgs Drt+ vwd+++ +  + ++ h+   l++
   Q: 319  SNEKSKDVTT-LDWNGEGTLLATGSCDGQARIWTTN-GDLISTLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWDVKAEEWKQQFEFHTGPTLDV 412
           4566677777.**********************765.5********************************************************** PP
   S: 101  sfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng.... 192
           ++   + ++++ s d  i + ++ +   ++ +++gh+g vncv+++p+g ll+s+s+D+t ++W++k+ + +++l+  ht+ +y + ++++g    
   Q: 413  DWRN-NVSFATSSTDTFIYLCKIGETRPVK-VFAGHQGEVNCVKWDPTGTLLASCSDDSTAKIWNIKQHNFVHDLRD-HTKEIYTIRWSPTGpgtn 505
           **99.8899********************9.*********************************************8.****************** PP
   S: 193  .....kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlg 283
                  l+s+s d+tvklwd + g+++ +lngh+d v+s++fspn+e+++sgs D+si iW l+ g+++kt++++    i   +++ ++n+l+++
   Q: 506  npnkqLTLASASFDSTVKLWDAELGKMICSLNGHRDAVYSLAFSPNGEYIASGSVDKSIHIWSLKEGKVVKTYTGEG--GIFEVCWNKEGNKLAAC 599
           ***9999********************************************************************54..55556679999999999 PP
   S: 284  sedskvniwklk 295
            +d++v +++++
   Q: 600  FADNSVCVLDFR 611
           999999999986 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MSSLTSVEMN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL VKFVQKGLQY 60
MEMEANLTNG EMETEEDFSF FQPLDLISKD VKELQDMLRE RKRKERDKEK EKDKSKENDR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTTCAC TCACCTCCGT CGAGATGAAT TTTCTGGTTT TCCGTTATCT TCAGGAATCA 60
GGTAATAACG ATAGAGATAA AGCCTTCTCT GTTTTCTCTC CTTTGTTCTT ATTTATTTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0016575--P:histone deacetylation
GO:0009409--P:response to cold

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000916	Aegilops tauschii	69.01	8.00e-63	231.00
IUUC-Aml-001717	Ailuropoda melanoleuca	60.28	1.00e-122	432.00
IUUC-Atr-002514	Amborella trichopoda	72.94	2.00e-166	578.00
IUUC-Apl-003708	Anas platyrhynchos	60.28	2.00e-122	432.00
IUUC-Aca-004611	Anolis carolinensis	60.28	1.00e-122	432.00
IUUC-Aly-005622	Arabidopsis lyrata	88.67	0.00e+00	724.00
IUUC-Ath-007137	Arabidopsis thaliana	87.56	0.00e+00	711.00
IUUC-Ame-011601	Astyanax mexicanus	60.83	3.00e-124	438.00
IUUC-Bta-012418	Bos taurus	60.00	4.00e-130	457.00
IUUC-Bdi-014315	Brachypodium distachyon	69.61	2.00e-159	555.00
IUUC-Bol-016277	Brassica oleracea	98.76	0.00e+00	816.00
IUUC-Cja-018832	Callithrix jacchus	60.56	3.00e-123	434.00
IUUC-Cfa-020029	Canis familiaris	60.56	3.00e-123	435.00
IUUC-Cpo-021682	Cavia porcellus	57.59	2.00e-130	458.00
IUUC-Cre-022979	Chlamydomonas reinhardtii	57.18	9.00e-119	420.00
IUUC-Csa-024075	Chlorocebus sabaeus	60.56	3.00e-123	435.00
IUUC-Cin-025704	Ciona intestinalis	52.53	8.00e-129	453.00
IUUC-Csv-026257	Ciona savignyi	54.97	1.00e-125	443.00
IUUC-Cme-027258	Cyanidioschyzon merolae	42.58	4.00e-94	338.00
IUUC-Dre-027906	Danio rerio	60.28	1.00e-123	436.00
IUUC-Dno-029196	Dasypus novemcinctus	60.56	3.00e-123	435.00
IUUC-Dor-030732	Dipodomys ordii	60.17	5.00e-119	421.00
IUUC-Dme-031939	Drosophila melanogaster	56.15	1.00e-115	410.00
IUUC-Ete-033150	Echinops telfairi	59.76	1.00e-108	386.00
IUUC-Eca-033897	Equus caballus	57.07	9.00e-130	456.00
IUUC-Eeu-034952	Erinaceus europaeus	52.53	1.00e-101	363.00
IUUC-Fca-035734	Felis catus	60.56	3.00e-123	435.00
IUUC-Fal-037185	Ficedula albicollis	60.28	1.00e-122	432.00
IUUC-Gmo-038870	Gadus morhua	59.44	2.00e-127	448.00
IUUC-Gga-041161	Gallus gallus	60.28	9.00e-123	433.00
IUUC-Gac-041844	Gasterosteus aculeatus	59.44	1.00e-130	459.00
IUUC-Gma-043369	Glycine max	76.31	0.00e+00	652.00
IUUC-Ggo-044882	Gorilla gorilla	60.56	3.00e-123	435.00
IUUC-Hsa-046488	Homo sapiens	60.56	3.00e-123	435.00
IUUC-Itr-047958	Ictidomys tridecemlineatus	60.56	3.00e-122	431.00
IUUC-Lch-050672	Latimeria chalumnae	60.00	3.00e-123	435.00
IUUC-Lpe-051084	Leersia perrieri	68.91	1.00e-158	552.00
IUUC-Loc-052030	Lepisosteus oculatus	59.72	7.00e-131	460.00
IUUC-Laf-054280	Loxodonta africana	60.28	6.00e-131	460.00
IUUC-Mcc-055203	Macaca mulatta	60.56	4.00e-123	434.00
IUUC-Meu-056563	Macropus eugenii	63.29	2.00e-84	305.00
IUUC-Mtr-058624	Medicago truncatula	68.27	5.00e-40	158.00
IUUC-Mga-059660	Meleagris gallopavo	60.28	9.00e-123	433.00
IUUC-Mvi-060557	Microbotryum violaceum	37.60	1.00e-71	264.00
IUUC-Mmr-060925	Microcebus murinus	60.56	1.00e-122	432.00
IUUC-Mdo-062078	Monodelphis domestica	60.28	7.00e-123	433.00
IUUC-Mmu-063603	Mus musculus	60.83	7.00e-124	437.00
IUUC-Mac-065508	Musa acuminata	53.35	3.00e-91	328.00
IUUC-Mpu-066741	Mustela putorius furo	60.56	3.00e-123	435.00
IUUC-Mlu-068152	Myotis lucifugus	60.56	3.00e-123	434.00
IUUC-Nle-069229	Nomascus leucogenys	60.56	3.00e-123	435.00
IUUC-Opr-070277	Ochotona princeps	49.72	2.00e-89	323.00
IUUC-Ont-071569	Oreochromis niloticus	60.56	5.00e-131	461.00
IUUC-Oan-073562	Ornithorhynchus anatinus	57.33	2.00e-130	459.00
IUUC-Ocu-074280	Oryctolagus cuniculus	60.56	2.00e-123	435.00
IUUC-Oba-075618	Oryza barthii	60.00	1.00e-36	147.00
IUUC-Obr-076718	Oryza brachyantha	68.35	2.00e-158	551.00
IUUC-Ogl-077302	Oryza glaberrima	60.00	1.00e-36	147.00
IUUC-Ogu-078718	Oryza glumaepatula	65.87	1.00e-159	556.00
IUUC-Oin-079515	Oryza indica	70.14	4.00e-63	236.00
IUUC-Olo-080427	Oryza longistaminata	72.05	2.00e-150	525.00
IUUC-Ome-081696	Oryza meridionalis	64.90	5.00e-155	540.00
IUUC-Oni-082137	Oryza nivara	65.87	1.00e-159	556.00
IUUC-Opu-083505	Oryza punctata	60.00	7.00e-37	148.00
IUUC-Oru-085276	Oryza rufipogon	65.87	7.00e-160	556.00
IUUC-Osa-085791	Oryza sativa	65.87	1.00e-159	556.00
IUUC-Ola-087365	Oryzias latipes	58.89	5.00e-129	454.00
IUUC-Olu-087589	Ostreococcus lucimarinus	60.32	7.00e-136	476.00
IUUC-Oga-088357	Otolemur garnettii	58.89	2.00e-114	405.00
IUUC-Oar-089214	Ovis aries	60.28	5.00e-131	461.00
IUUC-Ptr-091532	Pan troglodytes	60.56	3.00e-123	435.00
IUUC-Pan-091927	Papio anubis	60.56	3.00e-123	435.00
IUUC-Psi-093358	Pelodiscus sinensis	57.33	3.00e-130	458.00
IUUC-Pma-094105	Petromyzon marinus	56.82	2.00e-37	149.00
IUUC-Ppa-095868	Physcomitrella patens	68.57	4.00e-152	531.00
IUUC-Pfo-096158	Poecilia formosa	58.89	3.00e-130	457.00
IUUC-Pab-098705	Pongo abelii	60.56	3.00e-123	435.00
IUUC-Pop-098989	Populus trichocarpa	78.19	1.00e-176	612.00
IUUC-Pca-100256	Procavia capensis	59.83	6.00e-120	424.00
IUUC-Ppe-101572	Prunus persica	71.90	7.00e-156	543.00
IUUC-Pva-102616	Pteropus vampyrus	60.17	8.00e-120	423.00
IUUC-Rno-105411	Rattus norvegicus	60.56	2.00e-123	435.00
IUUC-Sha-106636	Sarcophilus harrisii	60.28	9.00e-123	433.00
IUUC-Smo-109301	Selaginella moellendorffii	68.23	9.00e-149	520.00
IUUC-Sit-110710	Setaria italica	69.17	2.00e-164	572.00
IUUC-Sly-111336	Solanum lycopersicum	69.13	2.00e-163	568.00
IUUC-Stu-112786	Solanum tuberosum	62.86	1.00e-142	499.00
IUUC-Sar-112971	Sorex araneus	51.82	3.00e-108	385.00
IUUC-Sbi-114420	Sorghum bicolor	68.65	1.00e-163	569.00
IUUC-Sre-115175	Sporisorium reilianum	44.31	1.00e-54	207.00
IUUC-Ssc-115695	Sus scrofa	60.56	2.00e-123	435.00
IUUC-Tgu-116898	Taeniopygia guttata	57.59	2.00e-130	459.00
IUUC-Tru-118254	Takifugu rubripes	60.28	2.00e-130	458.00
IUUC-Tsy-119424	Tarsius syrichta	47.86	1.00e-83	303.00
IUUC-Tni-119986	Tetraodon nigroviridis	59.44	4.00e-130	457.00
IUUC-Tca-121739	Theobroma cacao	74.32	0.00e+00	633.00
IUUC-Tae-125368	Triticum aestivum	69.66	4.00e-158	550.00
IUUC-Tur-126856	Triticum urartu	69.30	4.00e-78	285.00
IUUC-Tme-127126	Tuber melanosporum	35.26	6.00e-46	177.00
IUUC-Tbe-127767	Tupaia belangeri	59.73	1.00e-108	385.00
IUUC-Ttr-128826	Tursiops truncatus	56.60	2.00e-113	402.00
IUUC-Uma-129469	Ustilago maydis	43.30	5.00e-55	209.00
IUUC-Vpa-130768	Vicugna pacos	59.83	6.00e-120	424.00
IUUC-Vvi-131193	Vitis vinifera	74.02	5.00e-180	624.00
IUUC-Xtr-132842	Xenopus tropicalis	57.66	2.00e-115	409.00
IUUC-Xma-134168	Xiphophorus maculatus	60.00	4.00e-130	457.00
IUUC-Yli-134648	Yarrowia lipolytica	29.62	2.00e-38	154.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence