iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098813

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING zinc finger family protein

Genbank Nucleotide ID

CM000341

Gene Name

POPTRDRAFT_595585; POPTR_0005s03770g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s03770	POPTR_0005s03770.1	POPTR_0005s03770.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	6.80e-06	27.6	23	72

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkw....pglknssskefrCPlCr 46
           C+iCl +f ++ ++  C H f+ +C+ +w      + +    + +CPlC+
   Q: 23   CPICLAPFLQESYLDTCFHKFCYKCILQWtkvvSRKESRRPSSVKCPLCK 72
           ********77799999*************8885333333555558****7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDQQDSNSNK ENQSCSSSDS NPCPICLAPF LQESYLDTCF HKFCYKCILQ WTKVVSRKES 60
RRPSSVKCPL CKTDNFSLIY GYDGSSFQRH YVNQGFEDSS FFSKAHKYRL QCYYTEPGIL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACAAATCCA TGGAGTTGAA TTGAAAAAAT GGACCAACAA GACTCTAACA GCAACAAAGA 60
GAATCAATCT TGCTCTTCAA GTGATTCAAA TCCATGCCCC ATATGCCTTG CTCCTTTCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG

pop:POPTR_0005s03770g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002964	Amborella trichopoda	50.40	3.00e-72	264.00
IUUC-Aca-005305	Anolis carolinensis	36.36	3.00e-12	67.00
IUUC-Aly-005926	Arabidopsis lyrata	55.91	4.00e-83	300.00
IUUC-Ame-011109	Astyanax mexicanus	34.65	4.00e-10	60.10
IUUC-Bci-013854	Botrytis cinerea	33.77	9.00e-07	47.80
IUUC-Bdi-014270	Brachypodium distachyon	49.54	3.00e-61	227.00
IUUC-Cja-019105	Callithrix jacchus	24.49	1.00e-12	68.60
IUUC-Cpo-022335	Cavia porcellus	23.96	2.00e-11	64.30
IUUC-Csa-023870	Chlorocebus sabaeus	24.49	1.00e-12	68.20
IUUC-Dor-030239	Dipodomys ordii	24.56	2.00e-11	64.30
IUUC-Fal-037209	Ficedula albicollis	34.34	4.00e-11	63.50
IUUC-Gga-041267	Gallus gallus	32.32	9.00e-11	62.40
IUUC-Gma-042777	Glycine max	61.07	2.00e-91	328.00
IUUC-Ggo-044445	Gorilla gorilla	24.49	2.00e-12	68.20
IUUC-Hsa-045844	Homo sapiens	24.49	1.00e-12	68.20
IUUC-Loc-052944	Lepisosteus oculatus	33.66	2.00e-10	61.20
IUUC-Mcc-054800	Macaca mulatta	24.49	2.00e-12	68.20
IUUC-Mtr-058378	Medicago truncatula	57.30	2.00e-88	318.00
IUUC-Mmr-061481	Microcebus murinus	25.08	2.00e-11	64.30
IUUC-Mac-064635	Musa acuminata	52.94	1.00e-40	157.00
IUUC-Mlu-067088	Myotis lucifugus	23.83	7.00e-11	62.80
IUUC-Nle-069862	Nomascus leucogenys	24.49	2.00e-12	68.20
IUUC-Ocu-074826	Oryctolagus cuniculus	24.41	2.00e-11	64.70
IUUC-Oba-075429	Oryza barthii	49.55	4.00e-63	234.00
IUUC-Ogl-077444	Oryza glaberrima	49.11	2.00e-62	231.00
IUUC-Ogu-078603	Oryza glumaepatula	49.55	4.00e-63	234.00
IUUC-Oin-079777	Oryza indica	49.55	3.00e-63	234.00
IUUC-Oni-082396	Oryza nivara	49.55	4.00e-63	234.00
IUUC-Oru-084305	Oryza rufipogon	49.11	2.00e-62	232.00
IUUC-Ptr-091233	Pan troglodytes	24.49	1.00e-12	68.60
IUUC-Pan-092743	Papio anubis	24.49	2.00e-12	68.20
IUUC-Ppa-095273	Physcomitrella patens	31.51	1.00e-27	115.00
IUUC-Pfo-096706	Poecilia formosa	46.91	1.00e-12	67.80
IUUC-Ppe-101958	Prunus persica	67.05	6.00e-104	369.00
IUUC-Sit-109937	Setaria italica	45.30	8.00e-58	216.00
IUUC-Sly-110956	Solanum lycopersicum	61.87	2.00e-96	344.00
IUUC-Stu-111938	Solanum tuberosum	62.55	4.00e-89	320.00
IUUC-Sbi-114573	Sorghum bicolor	42.42	1.00e-51	195.00
IUUC-Tru-118393	Takifugu rubripes	34.31	2.00e-10	60.50
IUUC-Tni-120664	Tetraodon nigroviridis	33.01	2.00e-10	60.50
IUUC-Tae-122787	Triticum aestivum	45.82	9.00e-61	226.00
IUUC-Tur-126656	Triticum urartu	44.16	3.00e-52	197.00
IUUC-Vvi-131069	Vitis vinifera	66.67	6.00e-107	379.00
IUUC-Xma-133439	Xiphophorus maculatus	41.25	5.00e-12	65.90

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence