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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Ath-007273
UUCD1 version UUC-ArT-01077
Ensembl Protein ID AT3G18140.1
UniProt Accession Q9LV27; Q9LV27_ARATH
Genbank Protein ID AAM65008.1; AAN86145.1; AEE76052.1; BAB02026.1
Protein Name Putative WD-repeat protein; Transducin/WD40 repeat-like superfamily protein; WD-repeat protein, putative
Genbank Nucleotide ID AY087463; BT002312; CP002686; AB020749
Gene Name LST8-1; Lethal with Sec Thirteen 8-1; At3g18140
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G18140 AT3G18140.1 AT3G18140.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexMentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 7.60e-37 124.6 77 112
UBD/Beta-Prp 8.20e-53 180.4 165 304
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
    Ht+ v ++ f d + + sGs Dgt+k+WDlr +
   Q: 77 HTNNVMAVGFqCDaKWMYSGSEDGTVKIWDLRAPGC 112
    8999999999988999***************98877 PP
   


   UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkl.......lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfs 103
    ++++++ d+++++++ +gt vw++ +gk l++l+ h++ + + +sp k+l+t+s+D+t+k+w+++ +k +l+gh++ v+++ fs
   Q: 165 VRSLTVMWDGTMVVAANNRGTCYVWRLLRGKQtmtefepLHKLQAHNGHILKCLLSPANKYLATASSDKTVKIWNVDGFKLEKVLTGHQRWVWDCVFS 262
    55566777999******************9999***************************************************************** PP
   S: 104 psgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvh 146
    +g++lv++s+d t+r+w ++ g++++ + +gh++++ c ++h
   Q: 263 VDGEFLVTASSDMTARLWSMPAGKEVK-VYQGHHKATVCCALH 304
    ***************************.999999999998877 PP
   

Organism Arabidopsis thaliana
Protein Sequence
(Fasta)
MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL 60
FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG TVKIWDLRAP GCQKEYESVA 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-007273|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CTCCCCGCGT TAATTAATTA TGAGAAAAGC TTGGTAAAAA CCCTATTTTT CTTCTTCTCT 60
TCAATTTACA GTTCTCTGCA CCTTTTTCTT TCCCCTGTTT TTTGATCCTC AATCACCAAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-007273|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005768--C:endosome
GO:0016020--C:membrane
GO:0031931--C:TORC1 complex
GO:0031932--C:TORC2 complex
GO:0048571--P:long-day photoperiodism
GO:0032956--P:regulation of actin cytoskeleton organization
GO:1900088--P:regulation of inositol biosynthetic process
GO:1900091--P:regulation of raffinose biosynthetic process
GO:0031929--P:TOR signaling

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000595 Aegilops tauschii 83.82 8.00e-160 555.00
IUUC-Aml-001813 Ailuropoda melanoleuca 45.34 3.00e-78 284.00
IUUC-Atr-002512 Amborella trichopoda 84.14 7.00e-160 555.00
IUUC-Apl-003495 Anas platyrhynchos 42.70 5.00e-60 223.00
IUUC-Aca-004613 Anolis carolinensis 46.62 2.00e-80 291.00
IUUC-Aly-006340 Arabidopsis lyrata 99.34 0.00e+00 639.00
IUUC-Ago-007737 Ashbya gossypii 52.98 2.00e-95 341.00
IUUC-Acl-008090 Aspergillus clavatus 53.59 2.00e-69 255.00
IUUC-Afl-008490 Aspergillus flavus 48.47 3.00e-50 191.00
IUUC-Afu-009060 Aspergillus fumigatus 51.57 1.00e-62 233.00
IUUC-Ani-009251 Aspergillus nidulans 53.59 3.00e-69 254.00
IUUC-Ang-009528 Aspergillus niger 51.44 6.00e-87 313.00
IUUC-Aor-010005 Aspergillus oryzae 50.16 1.00e-81 295.00
IUUC-Ate-010423 Aspergillus terreus 54.01 5.00e-70 257.00
IUUC-Ame-011752 Astyanax mexicanus 45.66 3.00e-79 287.00
IUUC-Bgr-012299 Blumeria graminis 46.75 2.00e-80 291.00
IUUC-Bta-013007 Bos taurus 45.95 2.00e-78 285.00
IUUC-Bci-013987 Botrytis cinerea 49.68 3.00e-89 321.00
IUUC-Bdi-014082 Brachypodium distachyon 83.82 1.00e-159 554.00
IUUC-Bol-015088 Brassica oleracea 97.38 0.00e+00 628.00
IUUC-Bra-016682 Brassica rapa 66.06 1.00e-126 445.00
IUUC-Cel-018473 Caenorhabditis elegans 27.46 4.00e-33 134.00
IUUC-Cja-019216 Callithrix jacchus 41.76 4.00e-58 217.00
IUUC-Cfa-021229 Canis familiaris 45.34 1.00e-78 285.00
IUUC-Cpo-022270 Cavia porcellus 45.66 3.00e-79 287.00
IUUC-Cre-022742 Chlamydomonas reinhardtii 66.89 4.00e-128 450.00
IUUC-Csa-023275 Chlorocebus sabaeus 45.66 3.00e-79 287.00
IUUC-Cin-025588 Ciona intestinalis 43.04 2.00e-76 278.00
IUUC-Csv-026252 Ciona savignyi 44.09 4.00e-77 280.00
IUUC-Cgl-026418 Colletotrichum gloeosporioides 50.64 9.00e-88 316.00
IUUC-Cne-027013 Cryptococcus neoformans 52.13 7.00e-91 326.00
IUUC-Cme-027131 Cyanidioschyzon merolae 36.69 2.00e-66 245.00
IUUC-Dre-028424 Danio rerio 46.30 4.00e-80 290.00
IUUC-Dno-029327 Dasypus novemcinctus 45.66 3.00e-79 287.00
IUUC-Dor-030186 Dipodomys ordii 54.73 7.00e-47 180.00
IUUC-Dse-031475 Dothistroma septosporum 48.18 4.00e-87 313.00
IUUC-Dme-031826 Drosophila melanogaster 42.16 2.00e-70 258.00
IUUC-Ete-032252 Echinops telfairi 37.68 7.00e-48 183.00
IUUC-Eca-033889 Equus caballus 41.88 1.00e-48 185.00
IUUC-Fca-035989 Felis catus 45.34 1.00e-78 285.00
IUUC-Fal-036637 Ficedula albicollis 46.30 2.00e-80 291.00
IUUC-Fox-038066 Fusarium oxysporum 50.96 2.00e-88 318.00
IUUC-Fso-038288 Fusarium solani 50.00 2.00e-84 304.00
IUUC-Gmo-039477 Gadus morhua 46.62 5.00e-81 293.00
IUUC-Ggr-039990 Gaeumannomyces graminis 51.28 2.00e-89 321.00
IUUC-Gga-040890 Gallus gallus 46.62 4.00e-81 293.00
IUUC-Gac-041502 Gasterosteus aculeatus 46.30 2.00e-80 291.00
IUUC-Gma-042985 Glycine max 87.06 3.00e-165 573.00
IUUC-Ggo-045629 Gorilla gorilla 45.37 7.00e-78 283.00
IUUC-Hsa-045824 Homo sapiens 44.40 2.00e-68 252.00
IUUC-Hvu-047767 Hordeum vulgare 84.14 6.00e-160 555.00
IUUC-Itr-047932 Ictidomys tridecemlineatus 45.66 3.00e-79 287.00
IUUC-Kpa-049173 Komagataella pastoris 54.64 3.00e-99 353.00
IUUC-Lch-049703 Latimeria chalumnae 46.30 3.00e-80 291.00
IUUC-Lpe-050744 Leersia perrieri 75.73 9.00e-139 485.00
IUUC-Loc-052507 Lepisosteus oculatus 45.66 2.00e-79 288.00
IUUC-Lma-053084 Leptosphaeria maculans 49.85 2.00e-86 311.00
IUUC-Laf-053595 Loxodonta africana 45.66 4.00e-79 287.00
IUUC-Mcc-055634 Macaca mulatta 38.74 1.00e-69 256.00
IUUC-Meu-055925 Macropus eugenii 45.49 6.00e-70 256.00
IUUC-Mor-057131 Magnaporthe oryzae 51.28 5.00e-91 326.00
IUUC-Mpo-057524 Magnaporthe poae 50.32 6.00e-88 316.00
IUUC-Mtr-057980 Medicago truncatula 85.76 7.00e-163 565.00
IUUC-Mla-059082 Melampsora laricipopulina 42.73 5.00e-74 270.00
IUUC-Mga-059552 Meleagris gallopavo 43.21 2.00e-61 228.00
IUUC-Mvi-060504 Microbotryum violaceum 49.01 2.00e-81 295.00
IUUC-Mdo-062886 Monodelphis domestica 46.30 2.00e-80 291.00
IUUC-Mmu-063477 Mus musculus 45.66 1.00e-79 289.00
IUUC-Mac-065439 Musa acuminata 84.79 1.00e-160 557.00
IUUC-Mpu-066708 Mustela putorius furo 45.34 4.00e-78 284.00
IUUC-Mlu-067311 Myotis lucifugus 44.10 4.00e-76 277.00
IUUC-Nfi-068294 Neosartorya fischeri 50.63 2.00e-63 235.00
IUUC-Ncr-068811 Neurospora crassa 50.80 2.00e-86 311.00
IUUC-Nle-069632 Nomascus leucogenys 45.66 3.00e-79 287.00
IUUC-Opr-071128 Ochotona princeps 49.44 3.00e-48 183.00
IUUC-Ont-071494 Oreochromis niloticus 45.66 1.00e-79 288.00
IUUC-Oan-073298 Ornithorhynchus anatinus 38.71 7.00e-35 139.00
IUUC-Ocu-073983 Oryctolagus cuniculus 45.34 4.00e-78 283.00
IUUC-Oba-076001 Oryza barthii 74.76 1.00e-137 481.00
IUUC-Obr-076833 Oryza brachyantha 80.58 1.00e-153 535.00
IUUC-Ogl-077680 Oryza glaberrima 80.26 3.00e-153 533.00
IUUC-Ogu-078086 Oryza glumaepatula 74.43 2.00e-136 478.00
IUUC-Oin-079336 Oryza indica 80.26 3.00e-153 533.00
IUUC-Olo-080368 Oryza longistaminata 74.73 6.00e-119 419.00
IUUC-Oni-083046 Oryza nivara 74.76 1.00e-137 481.00
IUUC-Opu-084173 Oryza punctata 74.76 1.00e-137 481.00
IUUC-Oru-084599 Oryza rufipogon 74.76 1.00e-137 481.00
IUUC-Osa-086193 Oryza sativa 80.26 3.00e-153 533.00
IUUC-Ola-087216 Oryzias latipes 45.98 9.00e-80 289.00
IUUC-Olu-087852 Ostreococcus lucimarinus 70.82 3.00e-134 470.00
IUUC-Oga-088840 Otolemur garnettii 45.37 8.00e-78 283.00
IUUC-Oar-089294 Ovis aries 44.96 1.00e-67 248.00
IUUC-Ptr-090565 Pan troglodytes 45.66 3.00e-79 287.00
IUUC-Pan-092175 Papio anubis 45.66 3.00e-79 287.00
IUUC-Psi-093180 Pelodiscus sinensis 43.45 3.00e-62 230.00
IUUC-Pma-094705 Petromyzon marinus 47.27 5.00e-81 293.00
IUUC-Pno-095001 Phaeosphaeria nodorum 46.60 3.00e-77 280.00
IUUC-Ppa-095628 Physcomitrella patens 80.26 2.00e-152 530.00
IUUC-Pfo-097128 Poecilia formosa 46.30 8.00e-80 289.00
IUUC-Pab-098386 Pongo abelii 45.66 3.00e-79 287.00
IUUC-Pop-099064 Populus trichocarpa 85.76 2.00e-162 563.00
IUUC-Pca-100971 Procavia capensis 44.77 2.00e-69 254.00
IUUC-Ppe-101871 Prunus persica 86.64 2.00e-163 567.00
IUUC-Pva-102230 Pteropus vampyrus 53.28 3.00e-36 144.00
IUUC-Pgr-103511 Puccinia graminis 43.41 7.00e-75 273.00
IUUC-Ptt-103882 Puccinia triticina 40.17 4.00e-71 261.00
IUUC-Pte-104402 Pyrenophora teres 50.15 1.00e-86 312.00
IUUC-Pyt-104448 Pyrenophora triticirepentis 49.85 2.00e-86 311.00
IUUC-Rno-104880 Rattus norvegicus 45.34 7.00e-79 286.00
IUUC-Sce-106266 Saccharomyces cerevisiae 52.32 1.00e-93 335.00
IUUC-Sha-106966 Sarcophilus harrisii 46.30 2.00e-80 291.00
IUUC-Sja-107797 Schizosaccharomyces japonicus 56.07 7.00e-106 375.00
IUUC-Spo-108366 Schizosaccharomyces pombe 55.74 4.00e-105 373.00
IUUC-Smo-108749 Selaginella moellendorffii 76.77 3.00e-145 506.00
IUUC-Sit-110741 Setaria italica 84.47 4.00e-160 556.00
IUUC-Sly-111879 Solanum lycopersicum 85.96 2.00e-118 417.00
IUUC-Sbi-114551 Sorghum bicolor 84.14 1.00e-159 554.00
IUUC-Sre-114962 Sporisorium reilianum 46.88 5.00e-89 320.00
IUUC-Ssc-115363 Sus scrofa 45.05 2.00e-77 281.00
IUUC-Tgu-116695 Taeniopygia guttata 37.54 4.00e-51 194.00
IUUC-Tru-117999 Takifugu rubripes 45.69 8.00e-80 289.00
IUUC-Tni-119973 Tetraodon nigroviridis 45.98 2.00e-80 291.00
IUUC-Tca-121688 Theobroma cacao 86.77 7.00e-165 572.00
IUUC-Tre-122158 Trichoderma reesei 49.52 1.00e-86 312.00
IUUC-Tvi-122511 Trichoderma virens 50.16 1.00e-87 315.00
IUUC-Tae-124124 Triticum aestivum 83.82 8.00e-160 555.00
IUUC-Tur-126228 Triticum urartu 78.32 2.00e-144 503.00
IUUC-Tme-127100 Tuber melanosporum 55.12 1.00e-99 355.00
IUUC-Uma-129358 Ustilago maydis 48.27 1.00e-90 325.00
IUUC-Vda-129756 Verticillium dahliae 50.48 2.00e-88 318.00
IUUC-Vvi-131581 Vitis vinifera 84.47 3.00e-159 553.00
IUUC-Xtr-132363 Xenopus tropicalis 45.98 8.00e-81 293.00
IUUC-Xma-133857 Xiphophorus maculatus 46.30 8.00e-80 289.00
IUUC-Yli-134368 Yarrowia lipolytica 54.97 2.00e-100 358.00
IUUC-Zma-135854 Zea mays 84.14 4.00e-160 556.00
Created Date 25-Jun-2017

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