iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-018020

Ensembl Protein ID

Bra014839.1-P

UniProt Accession

M4DEB8; M4DEB8_BRARP

Protein Name

Reticulon-like protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra014839	Bra014839.1	Bra014839.1-P

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/Josephin	44.31	2.00e-39	161.00	IUUC-Mmu-063600
UBD/Alpha-Helix/UIM	44.31	2.00e-39	161.00	IUUC-Mmu-063600

Active Site

Position(s)	Description	Evidence
20	N/A	{ECO:0000256\|PROSITE-ProRule:PRU00331}
121		{ECO:0000256\|PROSITE-ProRule:PRU00331}
136		{ECO:0000256\|PROSITE-ProRule:PRU00331}

Organism

Brassica rapa

Protein Sequence
(Fasta)

MERTSNGGML YHEVQEANLC AVHCVNTVLQ GPFFSEFDLA AVASDLDEKE RQVMLEGAAA 60
ADFFSEESHN VSLGGDFSIQ VLQKALEVWD LQVIPLNCPD AEPAQIDPEL ENAFICHLHD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGCGAA CGAGCAACGG AGGAATGTTG TACCACGAGG TTCAGGAAGC TAATCTTTGC 60
GCCGTTCACT GCGTCAACAC CGTCCTCCAG GGACCCTTCT TCTCCGAGTT TGATTTGGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0256--Endoplasmic reticulum
KW-0378--Hydrolase
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR033865--Ataxin-3
IPR006155--Josephin
IPR003388--Reticulon
IPR009068--S15_NS1_RNA-bd

PROSITE

PS50957--JOSEPHIN
PS50845--RETICULON

Pfam

PF02099--Josephin
PF02453--Reticulon

SMART

SM01246--Josephin

Gene Ontology

GO:0005789--C:endoplasmic reticulum membrane
GO:0016021--C:integral component of membrane
GO:0004843--F:thiol-dependent ubiquitin-specific protease activity
GO:0016579--P:protein deubiquitination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002015	Ailuropoda melanoleuca	44.44	8.00e-40	157.00
IUUC-Atr-002735	Amborella trichopoda	84.21	4.00e-19	85.10
IUUC-Apl-003210	Anas platyrhynchos	44.44	3.00e-39	155.00
IUUC-Aca-005171	Anolis carolinensis	42.75	3.00e-28	118.00
IUUC-Aly-005625	Arabidopsis lyrata	87.15	2.00e-120	424.00
IUUC-Ath-007088	Arabidopsis thaliana	85.31	2.00e-121	427.00
IUUC-Ame-010715	Astyanax mexicanus	42.61	2.00e-40	159.00
IUUC-Bta-013538	Bos taurus	44.05	3.00e-40	158.00
IUUC-Bdi-015000	Brachypodium distachyon	71.71	2.00e-82	298.00
IUUC-Bol-015894	Brassica oleracea	90.34	1.00e-128	452.00
IUUC-Cel-018121	Caenorhabditis elegans	36.59	8.00e-28	117.00
IUUC-Cja-018840	Callithrix jacchus	36.98	6.00e-42	164.00
IUUC-Cfa-021035	Canis familiaris	37.35	4.00e-42	164.00
IUUC-Cpo-021776	Cavia porcellus	37.55	4.00e-39	154.00
IUUC-Csa-023257	Chlorocebus sabaeus	44.31	2.00e-38	152.00
IUUC-Cho-024878	Choloepus hoffmanni	44.44	4.00e-38	151.00
IUUC-Cme-027158	Cyanidioschyzon merolae	34.04	6.00e-14	70.50
IUUC-Dre-027506	Danio rerio	40.48	5.00e-26	110.00
IUUC-Dno-029172	Dasypus novemcinctus	44.05	7.00e-40	157.00
IUUC-Dor-030900	Dipodomys ordii	44.31	4.00e-41	161.00
IUUC-Ete-033000	Echinops telfairi	31.90	4.00e-12	65.50
IUUC-Eca-034338	Equus caballus	37.30	7.00e-40	157.00
IUUC-Eeu-034585	Erinaceus europaeus	44.32	1.00e-20	93.60
IUUC-Fal-037525	Ficedula albicollis	43.71	9.00e-40	157.00
IUUC-Gmo-039718	Gadus morhua	44.12	5.00e-40	157.00
IUUC-Gga-040774	Gallus gallus	44.31	6.00e-41	160.00
IUUC-Gac-041671	Gasterosteus aculeatus	44.71	2.00e-36	145.00
IUUC-Gma-042801	Glycine max	83.50	2.00e-97	348.00
IUUC-Ggo-044759	Gorilla gorilla	35.47	1.00e-25	109.00
IUUC-Hsa-046591	Homo sapiens	36.98	1.00e-41	163.00
IUUC-Hvu-047492	Hordeum vulgare	76.00	5.00e-84	303.00
IUUC-Itr-048851	Ictidomys tridecemlineatus	28.23	1.00e-18	86.70
IUUC-Lch-049519	Latimeria chalumnae	39.02	5.00e-25	107.00
IUUC-Lpe-050819	Leersia perrieri	75.00	3.00e-84	304.00
IUUC-Loc-051816	Lepisosteus oculatus	44.71	1.00e-41	163.00
IUUC-Laf-053784	Loxodonta africana	44.31	3.00e-41	162.00
IUUC-Mcc-055283	Macaca mulatta	36.98	9.00e-42	163.00
IUUC-Meu-056589	Macropus eugenii	40.12	9.00e-35	140.00
IUUC-Mtr-058233	Medicago truncatula	68.20	8.00e-100	356.00
IUUC-Mla-059013	Melampsora laricipopulina	29.88	2.00e-14	72.80
IUUC-Mga-059301	Meleagris gallopavo	44.31	4.00e-41	161.00
IUUC-Mmr-061038	Microcebus murinus	36.98	1.00e-41	163.00
IUUC-Mdo-062927	Monodelphis domestica	44.31	5.00e-41	160.00
IUUC-Mmu-063600	Mus musculus	44.31	4.00e-41	161.00
IUUC-Mpu-065897	Mustela putorius furo	37.15	9.00e-39	154.00
IUUC-Mlu-067543	Myotis lucifugus	44.44	5.00e-40	157.00
IUUC-Nle-069430	Nomascus leucogenys	43.11	5.00e-38	151.00
IUUC-Opr-070550	Ochotona princeps	36.42	7.00e-28	117.00
IUUC-Ont-071723	Oreochromis niloticus	44.12	1.00e-35	143.00
IUUC-Oan-073569	Ornithorhynchus anatinus	43.71	2.00e-40	159.00
IUUC-Ocu-074632	Oryctolagus cuniculus	44.79	1.00e-38	153.00
IUUC-Oba-075288	Oryza barthii	75.00	7.00e-88	316.00
IUUC-Obr-076050	Oryza brachyantha	74.88	4.00e-81	294.00
IUUC-Ogl-077174	Oryza glaberrima	75.00	7.00e-88	316.00
IUUC-Ogu-078006	Oryza glumaepatula	75.00	9.00e-88	316.00
IUUC-Oin-079278	Oryza indica	71.50	2.00e-85	308.00
IUUC-Olo-080941	Oryza longistaminata	75.00	8.00e-88	316.00
IUUC-Ome-081172	Oryza meridionalis	75.00	8.00e-88	316.00
IUUC-Oni-082239	Oryza nivara	74.51	2.00e-87	315.00
IUUC-Opu-083939	Oryza punctata	75.00	4.00e-87	314.00
IUUC-Oru-084393	Oryza rufipogon	75.00	7.00e-88	316.00
IUUC-Osa-086080	Oryza sativa	74.88	2.00e-87	315.00
IUUC-Ola-087566	Oryzias latipes	42.70	1.00e-35	143.00
IUUC-Oga-088617	Otolemur garnettii	31.74	5.00e-20	91.30
IUUC-Oar-090052	Ovis aries	43.71	3.00e-39	155.00
IUUC-Ptr-091435	Pan troglodytes	36.98	1.00e-41	163.00
IUUC-Pan-092742	Papio anubis	37.65	4.00e-39	154.00
IUUC-Psi-093313	Pelodiscus sinensis	44.31	2.00e-41	162.00
IUUC-Pma-094374	Petromyzon marinus	44.24	2.00e-37	149.00
IUUC-Ppa-095601	Physcomitrella patens	54.31	1.00e-62	232.00
IUUC-Pfo-097327	Poecilia formosa	43.82	5.00e-37	147.00
IUUC-Pab-098435	Pongo abelii	36.46	6.00e-39	154.00
IUUC-Pca-101022	Procavia capensis	43.75	3.00e-23	102.00
IUUC-Ppe-101545	Prunus persica	84.73	6.00e-101	360.00
IUUC-Pva-102844	Pteropus vampyrus	44.31	2.00e-41	162.00
IUUC-Rno-104896	Rattus norvegicus	44.31	2.00e-41	162.00
IUUC-Sha-107106	Sarcophilus harrisii	44.31	4.00e-41	161.00
IUUC-Sja-107947	Schizosaccharomyces japonicus	22.77	3.20e-01	30.00
IUUC-Sit-110477	Setaria italica	73.91	3.00e-85	308.00
IUUC-Sly-111416	Solanum lycopersicum	63.91	2.00e-54	204.00
IUUC-Stu-112227	Solanum tuberosum	65.70	3.00e-59	220.00
IUUC-Sar-113534	Sorex araneus	44.44	9.00e-40	157.00
IUUC-Sbi-114751	Sorghum bicolor	73.21	6.00e-84	303.00
IUUC-Ssc-115274	Sus scrofa	37.35	5.00e-42	164.00
IUUC-Tgu-117426	Taeniopygia guttata	44.44	4.00e-39	154.00
IUUC-Tru-118059	Takifugu rubripes	44.12	6.00e-36	144.00
IUUC-Tsy-119448	Tarsius syrichta	35.93	3.00e-28	119.00
IUUC-Tni-120681	Tetraodon nigroviridis	44.44	9.00e-24	101.00
IUUC-Tca-121442	Theobroma cacao	71.02	3.00e-107	380.00
IUUC-Tae-123969	Triticum aestivum	72.86	9.00e-77	280.00
IUUC-Tme-127036	Tuber melanosporum	31.82	2.30e-01	31.60
IUUC-Tbe-127638	Tupaia belangeri	33.85	3.00e-30	125.00
IUUC-Ttr-129288	Tursiops truncatus	37.13	2.00e-30	125.00
IUUC-Uma-129359	Ustilago maydis	36.31	3.00e-24	106.00
IUUC-Vpa-130788	Vicugna pacos	37.30	5.00e-40	157.00
IUUC-Vvi-131227	Vitis vinifera	78.71	2.00e-89	321.00
IUUC-Xtr-132147	Xenopus tropicalis	44.44	7.00e-41	160.00
IUUC-Xma-133144	Xiphophorus maculatus	43.82	3.00e-37	148.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence