iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114496

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000765

Gene Name

SORBI_006G042500

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb06g010430	Sb06g010430.1	Sb06g010430.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	9.90e-23	80.8	279	351

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           vp++f+CpIs+++M++Pvv++sG t+drs++e+w +++++ cPvt++ l+ ++ +Pn  +++ i++w+++n++
   Q: 279  VPQFFICPISNKVMENPVVIASGKTVDRSALEEWQKENRRICPVTDEVLAYTMSIPNVLIKHCIEHWRAANKI 351
           89*******************************************************************9986 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MDWSEEGINE EEEPTLRRRR ARLRSPPRGR PLPLPLPPGS RSLSPRRGGL AAFSGSRSPS 60
PRRVPMMAMR MGSSVRTTRK STPPIRSGAD APAGNDGEDT GVKEMIAKMR EGLPTSVPWD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACTGGT CGGAGGAGGG GATCAACGAG GAGGAGGAGC CCACGCTGCG CAGGCGGAGG 60
GCGAGGCTGC GTTCTCCTCC ACGCGGTCGA CCCTTGCCTC TCCCGCTCCC TCCAGGGTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_06g010430

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001015	Aegilops tauschii	47.21	9.00e-89	320.00
IUUC-Bdi-014181	Brachypodium distachyon	52.69	1.00e-142	499.00
IUUC-Hvu-047192	Hordeum vulgare	50.83	6.00e-128	450.00
IUUC-Lpe-051723	Leersia perrieri	48.98	2.00e-122	431.00
IUUC-Oba-075695	Oryza barthii	50.94	1.00e-134	472.00
IUUC-Obr-076271	Oryza brachyantha	51.24	2.00e-118	418.00
IUUC-Ogl-077902	Oryza glaberrima	50.75	3.00e-139	488.00
IUUC-Ogu-078226	Oryza glumaepatula	51.12	9.00e-135	473.00
IUUC-Oin-079808	Oryza indica	53.23	6.00e-122	430.00
IUUC-Olo-080703	Oryza longistaminata	49.22	3.00e-96	344.00
IUUC-Ome-081157	Oryza meridionalis	49.91	1.00e-137	482.00
IUUC-Oni-082070	Oryza nivara	50.94	7.00e-134	470.00
IUUC-Opu-083808	Oryza punctata	52.84	1.00e-138	485.00
IUUC-Oru-085024	Oryza rufipogon	50.94	7.00e-134	470.00
IUUC-Sit-109991	Setaria italica	66.35	0.00e+00	687.00
IUUC-Tae-124210	Triticum aestivum	51.87	7.00e-143	500.00
IUUC-Tur-126074	Triticum urartu	50.19	8.00e-135	473.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence