iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.7__1481__AT4G27470.1	fgenesh2_kg.7__1481__AT4G27470.1	fgenesh2_kg.7__1481__AT4G27470.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.50e-06	28.1	41	103
E3 activity/RING/RING	6.30e-07	30.5	44	92

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwl.........asggktcPvtrqplteedlvPn 58
            f C I l+  +dPvv+ +G+ +   +I kwl         ++ ++ cPv+++ +t ++lvP 
   Q: 41   CFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLhvqlssvsiDQHHNNCPVCKSNITITSLVPL 103
           599*****************************887776666555559**************96 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkw..pglknss..skefrCPlCr 46
           C iCl+   d p+v+ CgH+f+  C++kw  ++l+++s  + + +CP+C+
   Q: 44   CNICLDTAHD-PVVTLCGHLFCWPCIYKWlhVQLSSVSidQHHNNCPVCK 92
           99********.9999**************8844444430044458****6 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MEGNFFIRSD AQRAHDNGFI VKQKPNLITA PTGGQANESG CFDCNICLDT AHDPVVTLCG 60
HLFCWPCIYK WLHVQLSSVS IDQHHNNCPV CKSNITITSL VPLYGRGMSS PSSTFGSKKQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CATCACCGTC GTTTGTCTTT AAAACCTTTT GCGATTACCA TCATCGCACG TTGAATATAC 60
GTCGACTTTA ACATCTTCCA ATCTCTGAAA GCCCTCCTCC TCTCTTCGAG CTTCATCATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0005783--C:endoplasmic reticulum
GO:0016021--C:integral component of membrane
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding

KEGG

aly:ARALYDRAFT_492048

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000767	Aegilops tauschii	49.58	6.00e-27	113.00
IUUC-Ath-006841	Arabidopsis thaliana	95.63	3.00e-132	463.00
IUUC-Bdi-014665	Brachypodium distachyon	51.35	9.00e-26	109.00
IUUC-Bol-015969	Brassica oleracea	82.76	3.00e-108	383.00
IUUC-Bra-017099	Brassica rapa	81.55	1.00e-106	377.00
IUUC-Gma-044283	Glycine max	46.31	1.00e-42	166.00
IUUC-Hvu-047276	Hordeum vulgare	49.59	4.00e-28	117.00
IUUC-Lpe-051528	Leersia perrieri	37.50	4.00e-25	108.00
IUUC-Mac-065357	Musa acuminata	50.45	7.00e-27	113.00
IUUC-Obr-076866	Oryza brachyantha	37.13	2.00e-24	105.00
IUUC-Olo-081070	Oryza longistaminata	38.31	1.00e-23	102.00
IUUC-Pop-099944	Populus trichocarpa	48.58	5.00e-55	206.00
IUUC-Ppe-101989	Prunus persica	40.57	5.00e-38	150.00
IUUC-Sit-110543	Setaria italica	54.17	2.00e-26	112.00
IUUC-Sly-111102	Solanum lycopersicum	42.08	9.00e-37	145.00
IUUC-Stu-112640	Solanum tuberosum	41.00	4.00e-42	163.00
IUUC-Tca-121161	Theobroma cacao	49.39	5.00e-56	209.00
IUUC-Tae-123926	Triticum aestivum	35.44	3.00e-28	117.00
IUUC-Tur-126644	Triticum urartu	55.21	3.00e-26	112.00
IUUC-Vvi-131123	Vitis vinifera	42.50	6.00e-42	163.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence