iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-005662

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

GL348713

Gene Name

PUB45; ARALYDRAFT_890324

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_103118.1	scaffold_103118.1	scaffold_103118.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.00e-31	108.0	279	351

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +pee++CpIsl+lM dPv+++sG+ty+r +Iekw+++g++tcP+t+q+l++  l+Pn+ +++li++wce+n++
   Q: 279  PPEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQLSHLCLTPNYCVKALISSWCEQNGV 351
           69********************************************************************987 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MDVNEVEENF FAPGDAKLHG DMCNALSVIY CKIMSIFPSL EAARPRSKSG IQALCSLHVV 60
LEKVKNILRH CTESSKLYLA ITGDSVVLKF EKAKSSLIDS LRRVEDIVQQ SIGSQLLEIL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TAGGACGAGT TATTGAAGCA ATGGATGTTA ATGAGGTTGA AGAAAATTTC TTTGCCCCTG 60
GTGATGCCAA GGTATCTTAA TCAGACTTTT TTTCAATAAT TTTTATTGAC ATTTTTGGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

aly:ARALYDRAFT_890324

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000843	Aegilops tauschii	55.12	0.00e+00	783.00
IUUC-Ath-006967	Arabidopsis thaliana	96.88	0.00e+00	1426.00
IUUC-Ago-007832	Ashbya gossypii	41.67	7.40e-02	32.00
IUUC-Bdi-014509	Brachypodium distachyon	54.29	0.00e+00	763.00
IUUC-Bol-015443	Brassica oleracea	89.75	0.00e+00	1358.00
IUUC-Bra-017668	Brassica rapa	91.18	0.00e+00	1392.00
IUUC-Hvu-047761	Hordeum vulgare	55.47	0.00e+00	765.00
IUUC-Lpe-051154	Leersia perrieri	54.01	0.00e+00	778.00
IUUC-Mla-058984	Melampsora laricipopulina	35.56	4.00e-02	32.70
IUUC-Oba-075037	Oryza barthii	55.50	0.00e+00	802.00
IUUC-Obr-076068	Oryza brachyantha	54.51	0.00e+00	769.00
IUUC-Ogl-077029	Oryza glaberrima	55.50	0.00e+00	802.00
IUUC-Ogu-078230	Oryza glumaepatula	55.27	0.00e+00	796.00
IUUC-Oin-079566	Oryza indica	55.19	0.00e+00	801.00
IUUC-Ome-081577	Oryza meridionalis	55.06	0.00e+00	802.00
IUUC-Oni-082610	Oryza nivara	54.95	0.00e+00	793.00
IUUC-Opu-083186	Oryza punctata	55.07	0.00e+00	803.00
IUUC-Oru-084375	Oryza rufipogon	54.99	0.00e+00	791.00
IUUC-Osa-085376	Oryza sativa	54.93	0.00e+00	791.00
IUUC-Ppa-095245	Physcomitrella patens	35.61	3.00e-112	399.00
IUUC-Sit-109865	Setaria italica	55.62	0.00e+00	812.00
IUUC-Sly-110840	Solanum lycopersicum	63.50	0.00e+00	910.00
IUUC-Stu-112347	Solanum tuberosum	63.88	0.00e+00	908.00
IUUC-Sbi-114310	Sorghum bicolor	54.79	0.00e+00	796.00
IUUC-Tae-123152	Triticum aestivum	55.73	0.00e+00	791.00
IUUC-Tur-126692	Triticum urartu	52.20	0.00e+00	665.00
IUUC-Vvi-131273	Vitis vinifera	68.74	0.00e+00	1056.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence