iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114310

UUCD1 version

UUC-SoB-00531

Ensembl Protein ID

Sb03g042880.1

UniProt Accession

C5XFF1; C5XFF1_SORBI

Genbank Protein ID

EES04050.1; KXG33924.1; KXG33925.1

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000762; CM000762; CM000762

Gene Name

SORBI_003G391300

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g042880	Sb03g042880.1	Sb03g042880.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	9.20e-32	109.7	294	365

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +pee++CpIsl+lM dPv+++sG+ty+r +Iekw+++g++tcP+t+q+l++ +l+Pn+ +++li +wce+n+
   Q: 294  PPEELRCPISLQLMYDPVIISSGQTYERICIEKWFNDGHSTCPKTQQQLAHLSLTPNYCVKALIASWCEQNE 365
           59********************************************************************97 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MEAMEAEEGP FLANDAKLHA GICRAFHPSV SKLSAIFPFI EASRPRSKSG IQALCSLHVA 60
LDKAKGLLQH CADCSRLYLA ITSETVLLKF EKSRSQLQES LRRTGSIVTE DIGCKIVEIV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAAGCAA TGGAGGCTGA AGAAGGTCCT TTTCTGGCTA ATGATGCCAA GGTATCATCT 60
TTACAGTGAA TATGTGATAT GTCTGCTATT CCTGTTAATC TGTTGCTTGC CTACCTTTTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_03g042880

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000843	Aegilops tauschii	84.50	0.00e+00	1292.00
IUUC-Atr-002816	Amborella trichopoda	51.15	0.00e+00	674.00
IUUC-Aly-005662	Arabidopsis lyrata	54.74	0.00e+00	787.00
IUUC-Ath-006967	Arabidopsis thaliana	54.98	0.00e+00	782.00
IUUC-Bdi-014509	Brachypodium distachyon	82.85	0.00e+00	1253.00
IUUC-Bol-015443	Brassica oleracea	54.79	0.00e+00	795.00
IUUC-Bra-017668	Brassica rapa	55.16	0.00e+00	801.00
IUUC-Gma-043476	Glycine max	54.29	0.00e+00	798.00
IUUC-Hvu-047761	Hordeum vulgare	83.78	0.00e+00	1239.00
IUUC-Lpe-051154	Leersia perrieri	85.79	0.00e+00	1293.00
IUUC-Mtr-058026	Medicago truncatula	55.10	0.00e+00	768.00
IUUC-Mac-064644	Musa acuminata	49.32	0.00e+00	661.00
IUUC-Oba-075037	Oryza barthii	86.78	0.00e+00	1367.00
IUUC-Obr-076068	Oryza brachyantha	86.91	0.00e+00	1327.00
IUUC-Ogl-077029	Oryza glaberrima	86.78	0.00e+00	1367.00
IUUC-Ogu-078230	Oryza glumaepatula	86.75	0.00e+00	1364.00
IUUC-Oin-079566	Oryza indica	86.66	0.00e+00	1368.00
IUUC-Olo-080879	Oryza longistaminata	86.97	0.00e+00	1268.00
IUUC-Ome-081577	Oryza meridionalis	86.41	0.00e+00	1362.00
IUUC-Oni-082610	Oryza nivara	86.50	0.00e+00	1364.00
IUUC-Opu-083186	Oryza punctata	86.28	0.00e+00	1364.00
IUUC-Oru-084375	Oryza rufipogon	86.16	0.00e+00	1333.00
IUUC-Osa-085376	Oryza sativa	86.28	0.00e+00	1332.00
IUUC-Ppa-095879	Physcomitrella patens	36.96	1.00e-118	420.00
IUUC-Pop-100088	Populus trichocarpa	55.42	0.00e+00	851.00
IUUC-Ppe-101913	Prunus persica	55.64	0.00e+00	853.00
IUUC-Sit-109865	Setaria italica	92.27	0.00e+00	1447.00
IUUC-Sly-110840	Solanum lycopersicum	53.28	0.00e+00	761.00
IUUC-Stu-112347	Solanum tuberosum	52.79	0.00e+00	755.00
IUUC-Tca-121734	Theobroma cacao	56.60	0.00e+00	850.00
IUUC-Tae-125766	Triticum aestivum	84.84	0.00e+00	1306.00
IUUC-Tur-126692	Triticum urartu	78.89	0.00e+00	1101.00
IUUC-Vvi-131273	Vitis vinifera	56.50	0.00e+00	875.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence