iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114078

Ensembl Protein ID

Sb01g040800.1

UniProt Accession

C5WQV2; C5WQU6; C5WQV2_SORBI

Genbank Protein ID

EER92538.1; EER95161.2

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000760; CM000760

Gene Name

SORBI_001G433800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb01g040800	Sb01g040800.1	Sb01g040800.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-20	73.1	456	492
UBD/Beta-Prp	2.00e-41	143.0	390	623

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtgv 34
           H ++v+++af  ++  l +++++dD+tikvW+ ++g+
   Q: 456  HIGGVNDIAFahPNkQLcIITCGDDKTIKVWEATSGT 492
           9999*******97653359*************98885 PP

UBD/Beta-Prp

   S: 75   tikvwdlstgkcvhtlkghedsvls...lsfspsgdklvsGshdrtirvwdletgqclee...tlsghdgvvncvvvhpdg.nllvsGslDrtvrl 163
           + kvwdls+++++   +  +d ++s   + +sp+g  + ++ +  +++++  + g  l++   +++   gv+ ++  hp++  +++++++D+t+++
   Q: 390  NFKVWDLSKCTMTLQASLVKDPAVSvnrIIWSPDGTLFGVAYSRHIVQIYSYNGGDDLRQhleIDAHIGGVNDIAFAHPNKqLCIITCGDDKTIKV 485
           679****98887777665666665544488********99999**********9999999999999999************88999********** PP
   S: 164  Wdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgs..sDgsiri..Wdlrs 253
           W   +g+   t++g h+ +vys+   +++n +++ s +ldg++k w + +    + + +   + + ++ s ++ rl s++  +Dg   +  W+   
   Q: 486  WEATSGTKQFTFEG-HEAPVYSVCphYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGHWCTTMAYSADGSRLFSCGtsKDGESHLveWNESE 580
           *************9.********98899999******************99999***********************99888888877778***** PP
   S: 254  gdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkk 296
           g + +t+q+ +++++ v  ++ ++n +++++++  ++iw++++
   Q: 581  GAVKRTYQGFRKRSMGVVQFDTTRNRFLAAGDEFMIKIWDMDS 623
           ***********999999999********************976 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNMKY FEDEVINGNW DEVERYLGGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SKAVEILVKD LKVFASFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTACAGATC TGAGGCTGAG TAAAAATTAG GGCAAAATCT TTCCGCGGTT CTGTGGAGTT 60
CCGTGCTCTT GCCCAGCCCA GCCGGCTTCG GGCAATATCG ATGTTTATTT TGAAGTTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR027728--Topless_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0006355--P:regulation of transcription, DNA-templated

KEGG

sbi:SORBI_01g040730; sbi:SORBI_01g040800

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000565	Aegilops tauschii	90.27	0.00e+00	2069.00
IUUC-Atr-002737	Amborella trichopoda	77.19	0.00e+00	1719.00
IUUC-Aly-005472	Arabidopsis lyrata	78.06	0.00e+00	1731.00
IUUC-Ath-007640	Arabidopsis thaliana	77.62	0.00e+00	1742.00
IUUC-Bdi-014914	Brachypodium distachyon	90.31	0.00e+00	2038.00
IUUC-Bol-015359	Brassica oleracea	77.27	0.00e+00	1731.00
IUUC-Bra-016893	Brassica rapa	77.27	0.00e+00	1729.00
IUUC-Gma-043911	Glycine max	79.88	0.00e+00	1803.00
IUUC-Hvu-047688	Hordeum vulgare	90.94	0.00e+00	1956.00
IUUC-Lpe-051514	Leersia perrieri	89.64	0.00e+00	1974.00
IUUC-Mtr-058037	Medicago truncatula	80.50	0.00e+00	1773.00
IUUC-Mac-065382	Musa acuminata	81.91	0.00e+00	1892.00
IUUC-Oba-075912	Oryza barthii	92.23	0.00e+00	2040.00
IUUC-Obr-076921	Oryza brachyantha	92.33	0.00e+00	2066.00
IUUC-Ogl-077334	Oryza glaberrima	92.25	0.00e+00	2066.00
IUUC-Ogu-078494	Oryza glumaepatula	92.25	0.00e+00	2066.00
IUUC-Oin-079720	Oryza indica	90.81	0.00e+00	2055.00
IUUC-Olo-081034	Oryza longistaminata	89.48	0.00e+00	2036.00
IUUC-Ome-081778	Oryza meridionalis	92.33	0.00e+00	2072.00
IUUC-Oni-082412	Oryza nivara	91.90	0.00e+00	2041.00
IUUC-Opu-083406	Oryza punctata	90.35	0.00e+00	2001.00
IUUC-Oru-084328	Oryza rufipogon	92.12	0.00e+00	2053.00
IUUC-Osa-085765	Oryza sativa	92.25	0.00e+00	2066.00
IUUC-Ppa-095814	Physcomitrella patens	69.51	0.00e+00	1545.00
IUUC-Pop-098876	Populus trichocarpa	78.31	0.00e+00	1781.00
IUUC-Ppe-101370	Prunus persica	80.96	0.00e+00	1853.00
IUUC-Smo-109119	Selaginella moellendorffii	69.24	0.00e+00	1503.00
IUUC-Sit-110288	Setaria italica	95.66	0.00e+00	2125.00
IUUC-Sly-111739	Solanum lycopersicum	79.21	0.00e+00	1788.00
IUUC-Stu-112409	Solanum tuberosum	70.09	0.00e+00	1582.00
IUUC-Tca-121628	Theobroma cacao	79.20	0.00e+00	1800.00
IUUC-Tae-125600	Triticum aestivum	90.93	0.00e+00	2071.00
IUUC-Tur-126412	Triticum urartu	89.80	0.00e+00	2065.00
IUUC-Vvi-131079	Vitis vinifera	79.62	0.00e+00	1796.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence