iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Oba-075980

Ensembl Protein ID

OBART07G12280.1

UniProt Accession

A0A0D3GQA2; A0A0D3GQA2_9ORYZ

Protein Name

Ribosome biogenesis protein BOP1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OBART07G12280	OBART07G12280.1	OBART07G12280.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.00e-12	46.9	343	381

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+++v +l+   ++  ++sGs Dgti+vW++ tg+++k
   Q: 343  GHNGPVKSLSVeaTGQWIASGSSDGTIRVWEVETGRCIK 381
           8*********9976699********************87 PP

Organism

Oryza barthii

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MGHSDGDHGS DLSADDSPWS EGSWSDDDDE GSLSFEDSGE GSDAESDEPD APAVEESDSS 60
EDEVAPRNTV GDVPLEWYKN EEHIGYDITG SKIKKRDREG RIEAYLRNAD DAKNWRKIYD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGGCACA GCGACGGCGA CCACGGTAGC GACCTCTCCG CCGACGATTC CCCGTGGAGC 60
GAGGGGAGCT GGTCCGACGA CGATGACGAG GTGCGGCTCT CCTCTTCGAA GGATTTCGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR002469--Peptidase_S9B_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	84.28	0.00e+00	956.00
IUUC-Aml-001507	Ailuropoda melanoleuca	40.29	2.00e-123	436.00
IUUC-Atr-003141	Amborella trichopoda	65.09	2.00e-153	535.00
IUUC-Apl-003545	Anas platyrhynchos	40.36	4.00e-117	414.00
IUUC-Aly-005649	Arabidopsis lyrata	62.03	0.00e+00	793.00
IUUC-Ath-007625	Arabidopsis thaliana	60.24	0.00e+00	771.00
IUUC-Ago-007958	Ashbya gossypii	37.91	2.00e-128	452.00
IUUC-Acl-008344	Aspergillus clavatus	39.60	1.00e-112	399.00
IUUC-Afl-008616	Aspergillus flavus	38.21	5.00e-113	401.00
IUUC-Afu-009083	Aspergillus fumigatus	43.25	2.00e-61	230.00
IUUC-Ani-009365	Aspergillus nidulans	38.46	1.00e-113	403.00
IUUC-Ang-009796	Aspergillus niger	38.24	4.00e-109	388.00
IUUC-Aor-010015	Aspergillus oryzae	38.21	5.00e-113	401.00
IUUC-Ate-010537	Aspergillus terreus	37.30	1.00e-115	409.00
IUUC-Ame-011767	Astyanax mexicanus	52.94	5.00e-59	220.00
IUUC-Bgr-012286	Blumeria graminis	38.79	3.00e-125	441.00
IUUC-Bta-013569	Bos taurus	43.00	1.00e-137	483.00
IUUC-Bci-013820	Botrytis cinerea	39.47	2.00e-117	416.00
IUUC-Bdi-014895	Brachypodium distachyon	79.62	0.00e+00	1047.00
IUUC-Bol-016099	Brassica oleracea	63.74	0.00e+00	823.00
IUUC-Bra-017174	Brassica rapa	63.80	0.00e+00	829.00
IUUC-Cel-018201	Caenorhabditis elegans	38.74	4.00e-117	414.00
IUUC-Cja-019009	Callithrix jacchus	39.64	6.00e-127	447.00
IUUC-Cfa-020173	Canis familiaris	40.32	7.00e-129	454.00
IUUC-Cpo-021796	Cavia porcellus	43.16	9.00e-137	480.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	47.57	2.00e-159	555.00
IUUC-Csa-023440	Chlorocebus sabaeus	42.23	2.00e-140	492.00
IUUC-Cin-025782	Ciona intestinalis	42.24	6.00e-140	490.00
IUUC-Csv-026352	Ciona savignyi	43.22	1.00e-144	506.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	36.87	6.00e-105	374.00
IUUC-Cne-027004	Cryptococcus neoformans	41.53	2.00e-141	496.00
IUUC-Cme-027242	Cyanidioschyzon merolae	33.58	1.00e-99	356.00
IUUC-Dre-028658	Danio rerio	43.34	2.00e-149	522.00
IUUC-Dno-028883	Dasypus novemcinctus	43.53	3.00e-140	491.00
IUUC-Dor-031031	Dipodomys ordii	41.69	4.00e-139	488.00
IUUC-Dse-031443	Dothistroma septosporum	37.37	1.00e-111	396.00
IUUC-Dme-031786	Drosophila melanogaster	41.06	2.00e-140	492.00
IUUC-Eca-033677	Equus caballus	43.20	2.00e-137	481.00
IUUC-Eeu-035310	Erinaceus europaeus	38.00	4.00e-100	357.00
IUUC-Fca-035888	Felis catus	40.87	6.00e-131	460.00
IUUC-Fal-037438	Ficedula albicollis	44.67	1.00e-122	432.00
IUUC-Fox-037973	Fusarium oxysporum	40.37	5.00e-132	464.00
IUUC-Fso-038187	Fusarium solani	38.96	3.00e-128	452.00
IUUC-Gmo-039114	Gadus morhua	39.97	3.00e-129	455.00
IUUC-Ggr-039746	Gaeumannomyces graminis	38.63	1.00e-132	466.00
IUUC-Gga-040631	Gallus gallus	45.70	1.00e-82	299.00
IUUC-Gac-042582	Gasterosteus aculeatus	42.16	1.00e-133	469.00
IUUC-Gma-044215	Glycine max	60.59	0.00e+00	791.00
IUUC-Ggo-045587	Gorilla gorilla	42.72	8.00e-141	493.00
IUUC-Hsa-046319	Homo sapiens	42.72	4.00e-141	494.00
IUUC-Hvu-047526	Hordeum vulgare	78.24	0.00e+00	1013.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	43.32	2.00e-138	485.00
IUUC-Kpa-049221	Komagataella pastoris	37.59	2.00e-121	429.00
IUUC-Lch-049640	Latimeria chalumnae	43.29	5.00e-152	530.00
IUUC-Lpe-051135	Leersia perrieri	95.88	0.00e+00	1085.00
IUUC-Loc-051930	Lepisosteus oculatus	44.14	7.00e-151	526.00
IUUC-Lma-053290	Leptosphaeria maculans	39.85	1.00e-117	417.00
IUUC-Laf-053903	Loxodonta africana	41.33	4.00e-126	444.00
IUUC-Mcc-055471	Macaca mulatta	42.56	1.00e-141	496.00
IUUC-Meu-056190	Macropus eugenii	43.37	1.00e-138	486.00
IUUC-Mor-057135	Magnaporthe oryzae	38.36	6.00e-125	441.00
IUUC-Mpo-057475	Magnaporthe poae	37.30	1.00e-122	433.00
IUUC-Mtr-058689	Medicago truncatula	62.77	1.00e-142	499.00
IUUC-Mla-059149	Melampsora laricipopulina	40.93	8.00e-133	466.00
IUUC-Mga-059645	Meleagris gallopavo	39.75	4.00e-45	173.00
IUUC-Mvi-060485	Microbotryum violaceum	39.57	4.00e-122	432.00
IUUC-Mmr-061674	Microcebus murinus	42.51	3.00e-136	478.00
IUUC-Mdo-062973	Monodelphis domestica	41.45	8.00e-142	497.00
IUUC-Mmu-064180	Mus musculus	41.00	8.00e-139	486.00
IUUC-Mac-064535	Musa acuminata	66.22	4.00e-178	617.00
IUUC-Mpu-066406	Mustela putorius furo	42.88	9.00e-142	496.00
IUUC-Mlu-067795	Myotis lucifugus	42.67	1.00e-129	456.00
IUUC-Nfi-068516	Neosartorya fischeri	39.60	9.00e-56	211.00
IUUC-Ncr-068767	Neurospora crassa	39.38	5.00e-117	414.00
IUUC-Opr-071084	Ochotona princeps	44.88	4.00e-63	234.00
IUUC-Ont-071614	Oreochromis niloticus	41.73	7.00e-144	503.00
IUUC-Obr-076799	Oryza brachyantha	91.15	0.00e+00	1168.00
IUUC-Ogl-077134	Oryza glaberrima	93.81	0.00e+00	1157.00
IUUC-Ogu-078655	Oryza glumaepatula	96.18	0.00e+00	1149.00
IUUC-Oin-079654	Oryza indica	93.81	0.00e+00	1126.00
IUUC-Olo-080706	Oryza longistaminata	99.38	0.00e+00	1163.00
IUUC-Ome-081716	Oryza meridionalis	92.40	0.00e+00	1073.00
IUUC-Oni-082508	Oryza nivara	91.21	0.00e+00	1104.00
IUUC-Opu-083707	Oryza punctata	98.15	0.00e+00	1135.00
IUUC-Oru-084453	Oryza rufipogon	99.38	0.00e+00	1163.00
IUUC-Osa-085811	Oryza sativa	93.81	0.00e+00	1157.00
IUUC-Ola-087361	Oryzias latipes	43.58	4.00e-148	518.00
IUUC-Oga-088015	Otolemur garnettii	42.51	3.00e-142	498.00
IUUC-Oar-090058	Ovis aries	40.90	6.00e-74	271.00
IUUC-Ptr-090631	Pan troglodytes	42.75	2.00e-54	205.00
IUUC-Pan-092306	Papio anubis	42.49	2.00e-140	492.00
IUUC-Pma-094622	Petromyzon marinus	43.04	3.00e-147	514.00
IUUC-Pno-094794	Phaeosphaeria nodorum	35.86	1.00e-105	376.00
IUUC-Ppa-095528	Physcomitrella patens	54.07	4.00e-143	501.00
IUUC-Pfo-096682	Poecilia formosa	42.05	3.00e-146	511.00
IUUC-Pab-097939	Pongo abelii	42.55	4.00e-128	451.00
IUUC-Pop-099043	Populus trichocarpa	66.79	0.00e+00	760.00
IUUC-Pca-100333	Procavia capensis	42.51	2.00e-137	482.00
IUUC-Ppe-102078	Prunus persica	60.98	0.00e+00	767.00
IUUC-Pgr-103525	Puccinia graminis	41.86	2.00e-125	442.00
IUUC-Ptt-103929	Puccinia triticina	40.76	4.00e-120	425.00
IUUC-Pte-104029	Pyrenophora teres	39.54	2.00e-126	446.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	39.14	8.00e-126	443.00
IUUC-Rno-105248	Rattus norvegicus	43.00	1.00e-137	483.00
IUUC-Sce-106381	Saccharomyces cerevisiae	37.19	1.00e-125	443.00
IUUC-Sha-106519	Sarcophilus harrisii	44.43	5.00e-144	504.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	39.30	1.00e-119	423.00
IUUC-Spo-108071	Schizosaccharomyces pombe	38.51	1.00e-117	416.00
IUUC-Smo-108881	Selaginella moellendorffii	58.32	0.00e+00	689.00
IUUC-Sit-110551	Setaria italica	84.01	0.00e+00	1037.00
IUUC-Sly-110970	Solanum lycopersicum	72.89	2.00e-149	521.00
IUUC-Stu-112593	Solanum tuberosum	66.07	0.00e+00	838.00
IUUC-Sar-113123	Sorex araneus	39.17	2.00e-53	201.00
IUUC-Sbi-113945	Sorghum bicolor	82.82	0.00e+00	1049.00
IUUC-Sre-115188	Sporisorium reilianum	42.55	2.00e-77	283.00
IUUC-Ssc-115352	Sus scrofa	42.83	2.00e-142	498.00
IUUC-Tru-117685	Takifugu rubripes	42.79	1.00e-146	513.00
IUUC-Tni-119982	Tetraodon nigroviridis	41.73	2.00e-140	492.00
IUUC-Tca-121664	Theobroma cacao	66.08	0.00e+00	844.00
IUUC-Tre-122229	Trichoderma reesei	39.29	1.00e-114	406.00
IUUC-Tvi-122576	Trichoderma virens	40.37	8.00e-117	414.00
IUUC-Tae-124110	Triticum aestivum	81.14	0.00e+00	961.00
IUUC-Tur-126781	Triticum urartu	84.63	0.00e+00	943.00
IUUC-Tme-127080	Tuber melanosporum	41.17	3.00e-138	484.00
IUUC-Ttr-128514	Tursiops truncatus	44.84	4.00e-86	311.00
IUUC-Uma-129556	Ustilago maydis	42.55	2.00e-75	276.00
IUUC-Vda-129715	Verticillium dahliae	39.97	6.00e-124	437.00
IUUC-Vvi-131211	Vitis vinifera	64.51	0.00e+00	820.00
IUUC-Xma-133883	Xiphophorus maculatus	41.79	1.00e-140	493.00
IUUC-Yli-134438	Yarrowia lipolytica	38.47	4.00e-118	418.00
IUUC-Zma-135341	Zea mays	83.80	0.00e+00	716.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence