iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ppa-095429

Ensembl Protein ID

PP1S294_14V6.1

UniProt Accession

A9TR32; A9TR32_PHYPA

Genbank Protein ID

EDQ54093.1

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

DS545183

Gene Name

PHYPADRAFT_171471

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PP1S294_14V6	PP1S294_14V6.1	PP1S294_14V6.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.70e-35	120.3	357	390
UBD/Beta-Prp	3.80e-47	161.7	265	428

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrt 32
           H+++++++++   +  +l+s+s+Dgt+k+WD+r 
   Q: 357  HKGWISACKWhpKSaFHLLSASYDGTVKLWDTRA 390
           9**********733688**************876 PP

UBD/Beta-Prp

   S: 87   vhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl...ktgkllrtltg 177
             tl+gh++ v +l++s+ +d++ s+s+d  +r wd+e+    + +l+  +++  c++v ++g +ll++G++Dr++r+Wd     t   +++l++
   Q: 265  RATLQGHTQVVGALDWSE-RDTIYSASWDHSLRTWDVESAVNTN-ILTCSKAL-HCLSVGGEGnSLLAAGGTDRILRIWDPripGTVAPVQQLSS 356
           579***************.************************9.99998855.5666666666*****************66667778888898 PP
   S: 178  ghtdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWd 250
            h++ +   ++++++ ++l+s+s+dgtvklwd ++   ++tl  h+d v+s + + +d+++vsg++D +++i+ 
   Q: 357  -HKGWISACKWHPKSaFHLLSASYDGTVKLWDTRAIIPLVTLSQHKDKVLSADWW-KDDHIVSGGADSQLQIYS 428
           .*************99***************************************.9999************95 PP

Organism

Physcomitrella patens

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDNTNGDGVE RQVQVKFVTK LPPALRVVSS AFAIPAKLGR YGLSEVVNTL LGLEKPQPFD 60
FLIDGELLRS SIEQFLLTKG ITAETTLTIE YIPVVLPPEP QQPRAHDEWV SAVSGFNTRF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCATATAGAA CACCATCGTC TCCGTCAATG CCCACAGCGA AGTCGTCGTC AAGTAAAATG 60
TTTTTGGGTT TTGTGGATTT GTAGTCTCGG GGAGTGTCGG TCTTCTGCTT AAGCGCCATG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000460--P:maturation of 5.8S rRNA
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000470--P:maturation of LSU-rRNA
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

ppp:PHYPADRAFT_171471

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	52.10	4.00e-128	450.00
IUUC-Aml-001997	Ailuropoda melanoleuca	35.89	2.00e-62	232.00
IUUC-Atr-002544	Amborella trichopoda	50.12	6.00e-121	426.00
IUUC-Apl-003981	Anas platyrhynchos	34.57	3.00e-59	221.00
IUUC-Aca-004370	Anolis carolinensis	34.82	2.00e-65	242.00
IUUC-Aly-006455	Arabidopsis lyrata	49.77	3.00e-123	434.00
IUUC-Ath-006669	Arabidopsis thaliana	50.46	5.00e-120	423.00
IUUC-Ago-007864	Ashbya gossypii	33.78	2.00e-57	215.00
IUUC-Acl-008177	Aspergillus clavatus	32.16	7.00e-49	187.00
IUUC-Afl-008617	Aspergillus flavus	33.33	3.00e-47	182.00
IUUC-Afu-008752	Aspergillus fumigatus	31.14	4.00e-46	178.00
IUUC-Ani-009136	Aspergillus nidulans	31.92	8.00e-47	180.00
IUUC-Ang-009701	Aspergillus niger	31.63	1.00e-43	170.00
IUUC-Aor-009884	Aspergillus oryzae	33.33	1.00e-47	183.00
IUUC-Ame-011432	Astyanax mexicanus	35.76	1.00e-68	252.00
IUUC-Bgr-012218	Blumeria graminis	29.38	4.00e-45	174.00
IUUC-Bta-012829	Bos taurus	35.14	9.00e-64	236.00
IUUC-Bci-013953	Botrytis cinerea	29.03	1.00e-46	180.00
IUUC-Bdi-014351	Brachypodium distachyon	51.17	6.00e-119	419.00
IUUC-Bol-016514	Brassica oleracea	52.78	1.00e-119	422.00
IUUC-Bra-016988	Brassica rapa	52.53	3.00e-119	421.00
IUUC-Cel-018569	Caenorhabditis elegans	23.41	7.00e-28	117.00
IUUC-Cja-019468	Callithrix jacchus	36.08	2.00e-62	232.00
IUUC-Cfa-020471	Canis familiaris	35.39	2.00e-61	229.00
IUUC-Cpo-022260	Cavia porcellus	36.32	3.00e-64	238.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	36.76	5.00e-68	250.00
IUUC-Csa-023989	Chlorocebus sabaeus	35.85	1.00e-62	233.00
IUUC-Cho-024426	Choloepus hoffmanni	35.13	3.00e-50	191.00
IUUC-Cin-025789	Ciona intestinalis	33.41	4.00e-59	221.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	30.08	2.00e-08	52.00
IUUC-Cne-027063	Cryptococcus neoformans	28.27	5.00e-34	138.00
IUUC-Dre-027907	Danio rerio	36.47	9.00e-70	256.00
IUUC-Dno-029225	Dasypus novemcinctus	35.66	6.00e-63	233.00
IUUC-Dor-031082	Dipodomys ordii	28.94	4.00e-37	148.00
IUUC-Dse-031308	Dothistroma septosporum	34.30	6.00e-55	207.00
IUUC-Dme-032189	Drosophila melanogaster	32.41	2.00e-55	209.00
IUUC-Ete-032247	Echinops telfairi	32.55	1.00e-55	209.00
IUUC-Eca-034285	Equus caballus	34.91	4.00e-63	234.00
IUUC-Eeu-035322	Erinaceus europaeus	32.76	4.00e-51	194.00
IUUC-Fca-036114	Felis catus	35.61	8.00e-64	236.00
IUUC-Fal-036891	Ficedula albicollis	34.63	1.00e-54	206.00
IUUC-Fox-037965	Fusarium oxysporum	28.60	1.00e-38	153.00
IUUC-Fso-038244	Fusarium solani	28.48	2.00e-39	156.00
IUUC-Gmo-039040	Gadus morhua	37.47	2.00e-72	265.00
IUUC-Ggr-040093	Gaeumannomyces graminis	31.33	5.00e-25	108.00
IUUC-Gga-040610	Gallus gallus	33.81	2.00e-62	231.00
IUUC-Gac-042117	Gasterosteus aculeatus	37.09	1.00e-68	253.00
IUUC-Gma-043425	Glycine max	53.05	2.00e-129	454.00
IUUC-Ggo-045179	Gorilla gorilla	35.61	1.00e-62	233.00
IUUC-Hsa-046114	Homo sapiens	35.85	8.00e-63	233.00
IUUC-Hvu-047331	Hordeum vulgare	50.13	3.00e-106	377.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	35.93	3.00e-64	238.00
IUUC-Kpa-049304	Komagataella pastoris	30.40	1.00e-53	202.00
IUUC-Lch-050655	Latimeria chalumnae	33.43	2.00e-45	175.00
IUUC-Lpe-051675	Leersia perrieri	51.99	7.00e-127	446.00
IUUC-Loc-052868	Lepisosteus oculatus	35.92	3.00e-65	241.00
IUUC-Lma-053258	Leptosphaeria maculans	28.99	5.00e-42	166.00
IUUC-Laf-053993	Loxodonta africana	34.20	7.00e-63	233.00
IUUC-Mcc-055128	Macaca mulatta	29.81	2.00e-39	155.00
IUUC-Meu-056501	Macropus eugenii	35.09	1.00e-53	202.00
IUUC-Mor-057114	Magnaporthe oryzae	29.07	2.00e-42	166.00
IUUC-Mpo-057463	Magnaporthe poae	36.00	3.00e-19	87.40
IUUC-Mtr-058367	Medicago truncatula	51.72	2.00e-123	435.00
IUUC-Mla-059107	Melampsora laricipopulina	26.87	6.00e-37	147.00
IUUC-Mga-059745	Meleagris gallopavo	34.72	7.00e-62	230.00
IUUC-Mvi-060362	Microbotryum violaceum	28.76	1.00e-39	156.00
IUUC-Mdo-062257	Monodelphis domestica	35.38	2.00e-67	248.00
IUUC-Mmu-063546	Mus musculus	35.85	1.00e-64	239.00
IUUC-Mac-065540	Musa acuminata	52.71	3.00e-125	441.00
IUUC-Mpu-066284	Mustela putorius furo	35.38	1.00e-63	236.00
IUUC-Mlu-067241	Myotis lucifugus	36.32	1.00e-63	236.00
IUUC-Nfi-068260	Neosartorya fischeri	33.05	1.00e-48	186.00
IUUC-Ncr-068719	Neurospora crassa	29.85	6.00e-38	151.00
IUUC-Nle-068981	Nomascus leucogenys	36.10	4.00e-62	231.00
IUUC-Opr-071218	Ochotona princeps	34.74	7.00e-60	223.00
IUUC-Ont-071646	Oreochromis niloticus	35.46	1.00e-65	243.00
IUUC-Oan-073453	Ornithorhynchus anatinus	34.97	1.00e-69	255.00
IUUC-Ocu-074008	Oryctolagus cuniculus	35.38	1.00e-63	236.00
IUUC-Oba-075712	Oryza barthii	44.86	1.00e-94	339.00
IUUC-Obr-076721	Oryza brachyantha	50.00	1.00e-126	445.00
IUUC-Ogl-077229	Oryza glaberrima	51.37	9.00e-126	442.00
IUUC-Ogu-078977	Oryza glumaepatula	44.86	6.00e-95	340.00
IUUC-Oin-079683	Oryza indica	50.91	5.00e-125	440.00
IUUC-Olo-080291	Oryza longistaminata	41.80	5.00e-64	236.00
IUUC-Ome-081834	Oryza meridionalis	52.34	7.00e-126	443.00
IUUC-Oni-082507	Oryza nivara	49.54	1.00e-117	415.00
IUUC-Opu-083396	Oryza punctata	51.64	5.00e-125	440.00
IUUC-Oru-085220	Oryza rufipogon	49.77	4.00e-118	417.00
IUUC-Osa-085767	Oryza sativa	50.91	5.00e-125	440.00
IUUC-Ola-087420	Oryzias latipes	35.87	3.00e-69	254.00
IUUC-Olu-087740	Ostreococcus lucimarinus	35.00	7.00e-71	260.00
IUUC-Oga-088264	Otolemur garnettii	34.92	3.00e-62	231.00
IUUC-Oar-089335	Ovis aries	35.14	3.00e-64	238.00
IUUC-Ptr-091320	Pan troglodytes	35.85	8.00e-63	233.00
IUUC-Pan-092833	Papio anubis	36.08	9.00e-63	233.00
IUUC-Psi-093504	Pelodiscus sinensis	34.04	4.00e-60	224.00
IUUC-Pma-094189	Petromyzon marinus	35.33	6.00e-63	234.00
IUUC-Pno-094929	Phaeosphaeria nodorum	30.60	3.00e-41	161.00
IUUC-Pfo-096337	Poecilia formosa	36.62	2.00e-71	262.00
IUUC-Pab-097571	Pongo abelii	35.85	8.00e-63	233.00
IUUC-Pop-099977	Populus trichocarpa	51.83	8.00e-128	449.00
IUUC-Pca-100394	Procavia capensis	32.42	1.00e-51	196.00
IUUC-Ppe-101848	Prunus persica	48.96	1.00e-121	428.00
IUUC-Pva-102921	Pteropus vampyrus	33.33	2.00e-26	112.00
IUUC-Pgr-103637	Puccinia graminis	27.25	4.00e-37	148.00
IUUC-Ptt-103781	Puccinia triticina	25.36	3.00e-39	155.00
IUUC-Pte-104135	Pyrenophora teres	33.03	4.00e-44	173.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	31.09	5.00e-44	171.00
IUUC-Rno-105114	Rattus norvegicus	36.30	5.00e-64	237.00
IUUC-Sce-106401	Saccharomyces cerevisiae	32.46	3.00e-58	218.00
IUUC-Sha-107122	Sarcophilus harrisii	34.92	4.00e-62	231.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	32.35	1.00e-49	189.00
IUUC-Spo-108134	Schizosaccharomyces pombe	31.25	6.00e-47	181.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	29.71	3.00e-48	185.00
IUUC-Smo-108720	Selaginella moellendorffii	54.74	2.00e-135	474.00
IUUC-Sit-110354	Setaria italica	51.64	5.00e-127	447.00
IUUC-Sly-111023	Solanum lycopersicum	49.57	7.00e-115	406.00
IUUC-Stu-112778	Solanum tuberosum	52.20	3.00e-121	427.00
IUUC-Sar-113596	Sorex araneus	32.01	2.00e-46	179.00
IUUC-Sbi-114193	Sorghum bicolor	50.47	5.00e-120	423.00
IUUC-Sre-115002	Sporisorium reilianum	29.80	1.00e-18	87.00
IUUC-Ssc-116066	Sus scrofa	35.14	3.00e-63	234.00
IUUC-Tgu-117048	Taeniopygia guttata	34.57	2.00e-58	219.00
IUUC-Tni-119820	Tetraodon nigroviridis	36.88	6.00e-70	257.00
IUUC-Tca-121605	Theobroma cacao	51.49	3.00e-126	444.00
IUUC-Tre-121947	Trichoderma reesei	29.58	1.00e-42	166.00
IUUC-Tvi-122481	Trichoderma virens	29.75	3.00e-43	168.00
IUUC-Tae-123504	Triticum aestivum	52.10	5.00e-128	450.00
IUUC-Tur-126586	Triticum urartu	51.13	2.00e-115	408.00
IUUC-Tme-126900	Tuber melanosporum	34.34	4.00e-59	221.00
IUUC-Tbe-127736	Tupaia belangeri	31.21	5.00e-21	94.40
IUUC-Ttr-129041	Tursiops truncatus	29.41	2.00e-41	162.00
IUUC-Uma-129628	Ustilago maydis	29.44	1.00e-08	53.50
IUUC-Vpa-130260	Vicugna pacos	35.38	5.00e-64	237.00
IUUC-Vvi-131009	Vitis vinifera	52.94	3.00e-125	441.00
IUUC-Xtr-132083	Xenopus tropicalis	35.68	7.00e-66	243.00
IUUC-Xma-133094	Xiphophorus maculatus	36.15	3.00e-70	258.00
IUUC-Yli-134531	Yarrowia lipolytica	29.51	3.00e-38	152.00
IUUC-Zma-135509	Zea mays	50.93	4.00e-126	443.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence