iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007595

Ensembl Protein ID

AT2G31300.2

UniProt Accession

Q9SJW6; ARC1B_ARATH

Genbank Protein ID

AAD20675.1; AEC08524.1; AAL27513.1; AAN18136.1

Protein Name

Actin-related protein 2/3 complex subunit 1B; Actin-related protein C1; Actin-related protein C1B; Arp2/3 complex 41 kDa subunit; p41-ARC

Genbank Nucleotide ID

AC006593; CP002685; AF439845; BT000567

Gene Name

ARPC1B; At2g31300; F16D14.14

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G31300	AT2G31300.2	AT2G31300.2
AT2G31300	AT2G31300.1	AT2G31300.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
PINA	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.00e-13	50.3	144	173

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWD 29
           H++svt++a+ ++  ll++ s Dg+++v++
   Q: 144  HESSVTSVAWhPNnVLLATTSTDGKCRVFS 173
           9**********66699************97 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development.

Protein Sequence
(Fasta)

MAVVDVHRFA ESITCHAWSP DLSMVALCPN NTEVHIYKSL SQDHWERLHV LQKHDQIVSG 60
IDWSSKSNKI VTVSHDRNSY VWSLEGAEWV PTLVILRLNR AALCVQWSPK ENKFAVGSGA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACACACAAA CAAAAACATC CGTCTCTTTC ACTTACACTT TCACTTCACG TTTGCGACTG 60
TGTCGTCGTC AAGCTCCGGA TCTCATCGGC GTTTCATCAT AATTATCTGT CCATCTATTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0009--Actin-binding
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR017383--ARPC1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005885--C:Arp2/3 protein complex
GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0051015--F:actin filament binding
GO:0007015--P:actin filament organization
GO:0034314--P:Arp2/3 complex-mediated actin nucleation

KEGG

ath:AT2G31300

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000669	Aegilops tauschii	73.33	7.00e-126	443.00
IUUC-Atr-002844	Amborella trichopoda	79.44	1.00e-103	368.00
IUUC-Sre-115090	Sporisorium reilianum	43.71	2.00e-63	235.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence