iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
PINA	HINT
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.30e-17	61.9	82	125

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf........sdtllvsGsdDgtikvWDlrtgvllks 38
           H++s+t+l+f        + + l+s++ Dg++ ++D++ +vllks
   Q: 82   HAASITALSFytpsslsfP-RNLISAAADGSVAIFDTDPFVLLKS 125
           999******9997665433.449*************998888875 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD 60
DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP RNLISAAADG SVAIFDTDPF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCACAAAACT AACCGGTTTT GGTATCCGGT TTAATTTACA AAACAGTCTT CCTCTTCAAT 60
AAAAACCTAA AACCCTAATT ATTTTCAATC AGACTTCCAC TTTCGAAACC TCTCACCGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005730--C:nucleolus

KEGG

ath:AT1G65030

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000839	Aegilops tauschii	54.81	5.00e-33	132.00
IUUC-Aml-001803	Ailuropoda melanoleuca	32.61	4.00e-43	167.00
IUUC-Atr-003018	Amborella trichopoda	46.63	1.00e-86	313.00
IUUC-Apl-004199	Anas platyrhynchos	35.76	5.00e-43	167.00
IUUC-Aca-005157	Anolis carolinensis	32.30	1.00e-38	153.00
IUUC-Aly-006245	Arabidopsis lyrata	96.23	0.00e+00	659.00
IUUC-Ago-007878	Ashbya gossypii	26.19	1.00e-19	90.50
IUUC-Acl-008015	Aspergillus clavatus	24.15	5.00e-15	75.50
IUUC-Afl-008460	Aspergillus flavus	23.08	1.00e-09	57.80
IUUC-Afu-008760	Aspergillus fumigatus	23.62	2.00e-12	66.60
IUUC-Ani-009358	Aspergillus nidulans	22.72	2.00e-14	72.80
IUUC-Aor-010146	Aspergillus oryzae	23.08	1.00e-09	57.80
IUUC-Ame-011121	Astyanax mexicanus	31.93	8.00e-45	173.00
IUUC-Bgr-012152	Blumeria graminis	24.09	2.00e-09	55.80
IUUC-Bta-012383	Bos taurus	31.56	2.00e-42	166.00
IUUC-Bci-013752	Botrytis cinerea	26.48	9.00e-14	70.90
IUUC-Bdi-014505	Brachypodium distachyon	45.73	2.00e-64	238.00
IUUC-Bol-015458	Brassica oleracea	91.45	0.00e+00	625.00
IUUC-Bra-017790	Brassica rapa	90.86	7.00e-180	622.00
IUUC-Cja-018803	Callithrix jacchus	31.46	2.00e-37	148.00
IUUC-Cfa-020178	Canis familiaris	33.23	1.00e-44	173.00
IUUC-Cpo-021785	Cavia porcellus	32.92	6.00e-44	170.00
IUUC-Cre-022703	Chlamydomonas reinhardtii	34.38	7.00e-43	168.00
IUUC-Csa-023179	Chlorocebus sabaeus	32.92	2.00e-44	172.00
IUUC-Cho-025088	Choloepus hoffmanni	34.04	5.00e-30	124.00
IUUC-Csv-025887	Ciona savignyi	28.17	2.00e-28	119.00
IUUC-Cgl-026525	Colletotrichum gloeosporioides	24.24	4.00e-15	75.10
IUUC-Cne-027021	Cryptococcus neoformans	34.18	2.00e-24	107.00
IUUC-Dre-027360	Danio rerio	30.28	2.00e-44	172.00
IUUC-Dno-029836	Dasypus novemcinctus	31.96	3.00e-46	178.00
IUUC-Dor-030677	Dipodomys ordii	31.54	2.00e-36	145.00
IUUC-Dme-032004	Drosophila melanogaster	28.75	5.00e-23	101.00
IUUC-Ete-032837	Echinops telfairi	29.69	5.00e-36	144.00
IUUC-Eca-033291	Equus caballus	33.12	1.00e-43	169.00
IUUC-Eeu-035347	Erinaceus europaeus	31.76	3.00e-36	144.00
IUUC-Fca-036577	Felis catus	32.09	5.00e-43	167.00
IUUC-Fal-036810	Ficedula albicollis	31.50	1.00e-40	160.00
IUUC-Gmo-038537	Gadus morhua	31.47	5.00e-35	140.00
IUUC-Gga-040566	Gallus gallus	34.17	5.00e-45	174.00
IUUC-Gac-042422	Gasterosteus aculeatus	32.40	1.00e-40	159.00
IUUC-Gma-044199	Glycine max	61.40	6.00e-112	396.00
IUUC-Ggo-045365	Gorilla gorilla	27.96	3.00e-27	115.00
IUUC-Hsa-046121	Homo sapiens	33.33	9.00e-44	170.00
IUUC-Hvu-047592	Hordeum vulgare	51.76	9.00e-41	158.00
IUUC-Itr-048361	Ictidomys tridecemlineatus	33.45	3.00e-39	154.00
IUUC-Kpa-049407	Komagataella pastoris	29.22	6.00e-28	117.00
IUUC-Lch-049767	Latimeria chalumnae	31.01	3.00e-42	165.00
IUUC-Lpe-051569	Leersia perrieri	51.80	7.00e-64	236.00
IUUC-Loc-051940	Lepisosteus oculatus	29.85	3.00e-38	151.00
IUUC-Lma-053288	Leptosphaeria maculans	24.37	5.00e-13	68.60
IUUC-Laf-054463	Loxodonta africana	31.88	2.00e-40	159.00
IUUC-Mcc-055412	Macaca mulatta	31.44	5.00e-44	171.00
IUUC-Mor-056986	Magnaporthe oryzae	27.20	6.00e-10	58.20
IUUC-Mtr-057886	Medicago truncatula	62.87	3.00e-110	390.00
IUUC-Mga-060109	Meleagris gallopavo	34.47	4.00e-41	161.00
IUUC-Mvi-060326	Microbotryum violaceum	25.00	8.00e-26	110.00
IUUC-Mmr-060681	Microcebus murinus	32.92	5.00e-44	171.00
IUUC-Mdo-063004	Monodelphis domestica	31.15	8.00e-40	157.00
IUUC-Mmu-064184	Mus musculus	32.08	7.00e-41	160.00
IUUC-Mac-064987	Musa acuminata	58.02	4.00e-98	350.00
IUUC-Mpu-065847	Mustela putorius furo	31.59	4.00e-44	171.00
IUUC-Mlu-067608	Myotis lucifugus	32.81	7.00e-43	167.00
IUUC-Nfi-068531	Neosartorya fischeri	24.63	4.00e-14	72.40
IUUC-Nle-069302	Nomascus leucogenys	33.02	2.00e-43	168.00
IUUC-Ont-072591	Oreochromis niloticus	30.19	2.00e-35	142.00
IUUC-Oan-073558	Ornithorhynchus anatinus	32.51	3.00e-29	121.00
IUUC-Ocu-074558	Oryctolagus cuniculus	31.44	4.00e-39	154.00
IUUC-Obr-076509	Oryza brachyantha	54.81	4.00e-35	139.00
IUUC-Ogl-076960	Oryza glaberrima	49.25	2.00e-65	241.00
IUUC-Ogu-078660	Oryza glumaepatula	47.89	4.00e-59	221.00
IUUC-Oin-079790	Oryza indica	52.12	3.00e-75	274.00
IUUC-Ome-081631	Oryza meridionalis	47.14	2.00e-46	179.00
IUUC-Oni-083082	Oryza nivara	50.30	1.00e-66	245.00
IUUC-Opu-083394	Oryza punctata	51.20	8.00e-75	273.00
IUUC-Oru-084461	Oryza rufipogon	49.70	5.00e-68	250.00
IUUC-Osa-085655	Oryza sativa	50.39	1.00e-61	228.00
IUUC-Ola-086955	Oryzias latipes	33.02	1.00e-45	176.00
IUUC-Olu-087657	Ostreococcus lucimarinus	29.70	7.00e-28	117.00
IUUC-Oga-088108	Otolemur garnettii	33.64	8.00e-45	173.00
IUUC-Oar-090019	Ovis aries	31.25	5.00e-42	164.00
IUUC-Ptr-091544	Pan troglodytes	33.33	8.00e-44	170.00
IUUC-Pan-092562	Papio anubis	31.44	4.00e-44	171.00
IUUC-Psi-094025	Pelodiscus sinensis	36.12	8.00e-29	120.00
IUUC-Pma-094322	Petromyzon marinus	31.25	9.00e-35	139.00
IUUC-Pno-095112	Phaeosphaeria nodorum	24.11	3.00e-10	59.30
IUUC-Ppa-095541	Physcomitrella patens	38.55	6.00e-58	217.00
IUUC-Pfo-096667	Poecilia formosa	31.13	7.00e-30	124.00
IUUC-Pab-098064	Pongo abelii	31.44	9.00e-44	170.00
IUUC-Pop-099969	Populus trichocarpa	68.90	1.00e-125	441.00
IUUC-Pca-101053	Procavia capensis	32.08	7.00e-40	156.00
IUUC-Ppe-101839	Prunus persica	68.13	5.00e-130	456.00
IUUC-Pva-102963	Pteropus vampyrus	33.44	1.00e-40	160.00
IUUC-Pgr-103276	Puccinia graminis	25.53	9.00e-13	67.80
IUUC-Pte-104117	Pyrenophora teres	24.09	2.00e-08	53.50
IUUC-Pyt-104649	Pyrenophora triticirepentis	24.62	1.00e-09	57.80
IUUC-Rno-105975	Rattus norvegicus	33.12	1.00e-38	153.00
IUUC-Sce-106226	Saccharomyces cerevisiae	27.48	1.00e-17	84.00
IUUC-Sha-106907	Sarcophilus harrisii	31.03	4.00e-41	161.00
IUUC-Sja-107867	Schizosaccharomyces japonicus	24.12	5.00e-15	74.70
IUUC-Spo-108377	Schizosaccharomyces pombe	24.22	1.00e-16	79.70
IUUC-Smo-109068	Selaginella moellendorffii	39.56	4.00e-60	224.00
IUUC-Sit-110114	Setaria italica	47.43	1.00e-67	249.00
IUUC-Sly-111581	Solanum lycopersicum	63.19	2.00e-112	397.00
IUUC-Stu-112770	Solanum tuberosum	63.19	6.00e-113	399.00
IUUC-Sbi-114797	Sorghum bicolor	47.63	4.00e-63	234.00
IUUC-Sre-114941	Sporisorium reilianum	28.27	8.00e-31	127.00
IUUC-Ssc-116346	Sus scrofa	32.40	4.00e-44	171.00
IUUC-Tgu-116628	Taeniopygia guttata	34.28	1.00e-43	169.00
IUUC-Tru-117646	Takifugu rubripes	32.70	9.00e-40	156.00
IUUC-Tsy-119593	Tarsius syrichta	30.93	4.00e-23	101.00
IUUC-Tni-119872	Tetraodon nigroviridis	31.65	2.00e-43	168.00
IUUC-Tca-121500	Theobroma cacao	69.94	4.00e-134	470.00
IUUC-Tre-122151	Trichoderma reesei	30.13	1.00e-12	67.00
IUUC-Tae-122830	Triticum aestivum	48.79	1.00e-66	245.00
IUUC-Tur-126015	Triticum urartu	52.86	3.00e-33	133.00
IUUC-Tbe-127959	Tupaia belangeri	32.39	3.00e-35	141.00
IUUC-Ttr-129125	Tursiops truncatus	33.02	8.00e-43	167.00
IUUC-Uma-129567	Ustilago maydis	32.30	2.00e-29	123.00
IUUC-Vpa-130157	Vicugna pacos	36.53	2.00e-26	112.00
IUUC-Vvi-131065	Vitis vinifera	67.86	2.00e-111	394.00
IUUC-Xtr-132601	Xenopus tropicalis	30.00	5.00e-33	134.00
IUUC-Xma-133142	Xiphophorus maculatus	31.03	8.00e-36	143.00
IUUC-Yli-134580	Yarrowia lipolytica	27.19	4.00e-18	85.10
IUUC-Zma-135330	Zea mays	52.10	5.00e-80	290.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence