iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-18	66.8	112	145

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrt 32
           gH+d+v +l+    + + + sGs D ++++WDlr 
   Q: 112  GHKDRVVSLCMspiN-DSFMSGSLDRSVRLWDLRV 145
           8*********98765.789*************985 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus (By similarity). Promotes flowering under long days (LD) via the regulation of bolting (PubMed:27968983).

Protein Sequence
(Fasta)

MSLTELDDGL VRRMAMGAVF SDFGGKIHSV GFHRTDDLLV TSSEDDSLRL FDIANAKQLK 60
ITYHKKHGTD RVCFTHHPSS LICSSRYNLE STGESLRYLS MYDNRILRYF KGHKDRVVSL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTTTTCTTT TGTTATCCCA ATTCTTAAAA CTAAAACGGC TGCGTTTAGT AACCCGCGAA 60
ACCCACTAAA CTCTTTAGTT CTCTCTCTCG TTCCCTTGCC CCTCTCCCTC TCTCGTCCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0287--Flowering
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005634--C:nucleus
GO:0048188--C:Set1C/COMPASS complex
GO:0003682--F:chromatin binding
GO:0009908--P:flower development
GO:0080182--P:histone H3-K4 trimethylation
GO:0016571--P:histone methylation
GO:0048586--P:regulation of long-day photoperiodism, flowering
GO:0048510--P:regulation of timing of transition from vegetative to reproductive phase

KEGG

ath:AT5G14530

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001012	Aegilops tauschii	76.83	1.00e-118	418.00
IUUC-Aml-001221	Ailuropoda melanoleuca	39.42	4.00e-65	240.00
IUUC-Atr-002592	Amborella trichopoda	79.71	2.00e-129	454.00
IUUC-Aca-005383	Anolis carolinensis	39.42	3.00e-64	237.00
IUUC-Aly-005437	Arabidopsis lyrata	99.05	0.00e+00	657.00
IUUC-Ago-007804	Ashbya gossypii	32.89	1.00e-38	152.00
IUUC-Acl-008217	Aspergillus clavatus	32.82	5.00e-42	164.00
IUUC-Afl-008539	Aspergillus flavus	33.14	2.00e-41	162.00
IUUC-Afu-009105	Aspergillus fumigatus	33.13	7.00e-42	163.00
IUUC-Ani-009474	Aspergillus nidulans	32.10	2.00e-39	155.00
IUUC-Ang-009858	Aspergillus niger	33.33	2.00e-41	162.00
IUUC-Aor-009955	Aspergillus oryzae	33.14	2.00e-41	162.00
IUUC-Ate-010364	Aspergillus terreus	32.93	7.00e-42	163.00
IUUC-Ame-010661	Astyanax mexicanus	39.67	8.00e-63	234.00
IUUC-Bgr-012008	Blumeria graminis	31.63	2.00e-40	159.00
IUUC-Bta-013022	Bos taurus	39.34	8.00e-62	231.00
IUUC-Bci-013966	Botrytis cinerea	31.42	2.00e-39	155.00
IUUC-Bdi-015066	Brachypodium distachyon	77.60	6.00e-152	529.00
IUUC-Bol-016019	Brassica oleracea	95.74	0.00e+00	659.00
IUUC-Bra-017871	Brassica rapa	96.85	0.00e+00	642.00
IUUC-Cel-018276	Caenorhabditis elegans	31.13	2.00e-44	172.00
IUUC-Cja-019309	Callithrix jacchus	39.42	4.00e-65	240.00
IUUC-Cfa-020345	Canis familiaris	39.42	4.00e-65	240.00
IUUC-Cpo-022227	Cavia porcellus	35.78	4.00e-52	197.00
IUUC-Csa-023267	Chlorocebus sabaeus	38.78	3.00e-67	248.00
IUUC-Cin-025628	Ciona intestinalis	40.88	9.00e-69	253.00
IUUC-Csv-026164	Ciona savignyi	41.01	3.00e-71	261.00
IUUC-Cgl-026516	Colletotrichum gloeosporioides	29.70	6.00e-35	140.00
IUUC-Cne-026890	Cryptococcus neoformans	33.81	2.00e-28	119.00
IUUC-Dre-028001	Danio rerio	40.06	2.00e-66	245.00
IUUC-Dno-029704	Dasypus novemcinctus	40.19	3.00e-66	244.00
IUUC-Dor-031078	Dipodomys ordii	42.79	4.00e-47	180.00
IUUC-Dse-031152	Dothistroma septosporum	32.93	3.00e-40	158.00
IUUC-Dme-032085	Drosophila melanogaster	39.24	1.00e-69	256.00
IUUC-Ete-033158	Echinops telfairi	39.49	1.00e-65	242.00
IUUC-Eca-033879	Equus caballus	41.60	3.00e-57	215.00
IUUC-Fca-035896	Felis catus	39.42	4.00e-65	240.00
IUUC-Fox-037858	Fusarium oxysporum	32.52	5.00e-42	164.00
IUUC-Fso-038386	Fusarium solani	31.69	3.00e-35	141.00
IUUC-Gmo-038506	Gadus morhua	40.85	7.00e-63	234.00
IUUC-Ggr-040090	Gaeumannomyces graminis	31.06	7.00e-40	157.00
IUUC-Gga-040192	Gallus gallus	39.42	4.00e-65	240.00
IUUC-Gac-042494	Gasterosteus aculeatus	40.39	2.00e-61	229.00
IUUC-Gma-044074	Glycine max	85.35	1.00e-163	568.00
IUUC-Ggo-044584	Gorilla gorilla	38.46	3.00e-66	244.00
IUUC-Hsa-045866	Homo sapiens	39.42	4.00e-65	240.00
IUUC-Hvu-047731	Hordeum vulgare	79.69	1.00e-125	441.00
IUUC-Itr-048338	Ictidomys tridecemlineatus	39.42	4.00e-65	240.00
IUUC-Kpa-049249	Komagataella pastoris	33.99	3.00e-44	171.00
IUUC-Lpe-050830	Leersia perrieri	76.90	2.00e-148	517.00
IUUC-Lma-053026	Leptosphaeria maculans	31.90	3.00e-40	158.00
IUUC-Mcc-055583	Macaca mulatta	39.42	4.00e-65	240.00
IUUC-Meu-056113	Macropus eugenii	32.37	2.00e-43	168.00
IUUC-Mor-057267	Magnaporthe oryzae	31.88	3.00e-36	145.00
IUUC-Mpo-057502	Magnaporthe poae	31.03	9.00e-41	160.00
IUUC-Mtr-058200	Medicago truncatula	83.12	4.00e-160	556.00
IUUC-Mla-058815	Melampsora laricipopulina	35.63	2.00e-51	195.00
IUUC-Mga-059407	Meleagris gallopavo	41.63	2.00e-60	224.00
IUUC-Mvi-060411	Microbotryum violaceum	35.91	7.00e-51	193.00
IUUC-Mmr-061470	Microcebus murinus	39.42	4.00e-65	240.00
IUUC-Mdo-062860	Monodelphis domestica	39.42	1.00e-64	239.00
IUUC-Mmu-063105	Mus musculus	39.42	4.00e-65	240.00
IUUC-Mac-065314	Musa acuminata	78.06	6.00e-156	542.00
IUUC-Mpu-066472	Mustela putorius furo	41.63	2.00e-60	224.00
IUUC-Mlu-067073	Myotis lucifugus	39.35	1.00e-64	239.00
IUUC-Nfi-068284	Neosartorya fischeri	32.93	5.00e-42	164.00
IUUC-Ncr-068702	Neurospora crassa	29.78	9.00e-32	130.00
IUUC-Nle-069451	Nomascus leucogenys	39.42	4.00e-65	240.00
IUUC-Opr-071112	Ochotona princeps	41.63	2.00e-60	224.00
IUUC-Ont-071988	Oreochromis niloticus	40.66	5.00e-64	238.00
IUUC-Oan-072947	Ornithorhynchus anatinus	41.25	4.00e-60	223.00
IUUC-Ocu-074969	Oryctolagus cuniculus	39.42	4.00e-65	240.00
IUUC-Oba-075394	Oryza barthii	67.27	6.00e-107	379.00
IUUC-Obr-076456	Oryza brachyantha	76.34	1.00e-148	518.00
IUUC-Ogl-076973	Oryza glaberrima	77.29	7.00e-151	525.00
IUUC-Ogu-078296	Oryza glumaepatula	67.27	6.00e-107	379.00
IUUC-Oin-079656	Oryza indica	77.29	7.00e-151	525.00
IUUC-Olo-080893	Oryza longistaminata	66.25	3.00e-122	430.00
IUUC-Ome-081559	Oryza meridionalis	72.67	8.00e-67	245.00
IUUC-Oni-083104	Oryza nivara	67.27	6.00e-107	379.00
IUUC-Opu-084098	Oryza punctata	63.09	1.00e-112	398.00
IUUC-Oru-084364	Oryza rufipogon	67.27	3.00e-107	380.00
IUUC-Osa-086296	Oryza sativa	77.29	7.00e-151	525.00
IUUC-Ola-087095	Oryzias latipes	40.71	9.00e-67	246.00
IUUC-Olu-087603	Ostreococcus lucimarinus	34.93	6.00e-52	197.00
IUUC-Oga-088766	Otolemur garnettii	39.42	4.00e-65	240.00
IUUC-Oar-089565	Ovis aries	38.59	1.00e-62	232.00
IUUC-Ptr-091219	Pan troglodytes	38.14	9.00e-66	243.00
IUUC-Pan-091733	Papio anubis	39.42	4.00e-65	240.00
IUUC-Pma-094332	Petromyzon marinus	38.46	2.00e-68	251.00
IUUC-Pno-094960	Phaeosphaeria nodorum	31.79	3.00e-41	161.00
IUUC-Ppa-095292	Physcomitrella patens	65.27	9.00e-124	435.00
IUUC-Pfo-096775	Poecilia formosa	40.66	8.00e-64	237.00
IUUC-Pab-098340	Pongo abelii	38.14	1.00e-66	246.00
IUUC-Pop-098907	Populus trichocarpa	80.85	2.00e-160	557.00
IUUC-Pca-100635	Procavia capensis	40.86	2.00e-59	221.00
IUUC-Ppe-101452	Prunus persica	79.75	4.00e-156	543.00
IUUC-Pva-102798	Pteropus vampyrus	39.42	6.00e-65	240.00
IUUC-Pgr-103395	Puccinia graminis	36.65	2.00e-55	208.00
IUUC-Ptt-103747	Puccinia triticina	37.64	1.00e-54	206.00
IUUC-Pte-104129	Pyrenophora teres	34.27	1.00e-39	157.00
IUUC-Pyt-104773	Pyrenophora triticirepentis	31.44	2.00e-41	162.00
IUUC-Rno-106127	Rattus norvegicus	38.66	3.00e-61	227.00
IUUC-Sce-106257	Saccharomyces cerevisiae	32.46	1.00e-38	153.00
IUUC-Sha-107529	Sarcophilus harrisii	37.58	2.00e-61	228.00
IUUC-Sja-107724	Schizosaccharomyces japonicus	31.91	3.00e-40	158.00
IUUC-Spo-108128	Schizosaccharomyces pombe	30.59	1.00e-38	152.00
IUUC-Smo-109591	Selaginella moellendorffii	63.67	3.00e-120	423.00
IUUC-Sit-109858	Setaria italica	77.64	4.00e-149	520.00
IUUC-Sly-111267	Solanum lycopersicum	74.55	1.00e-149	521.00
IUUC-Sar-113079	Sorex araneus	41.63	2.00e-60	224.00
IUUC-Sbi-114232	Sorghum bicolor	80.26	2.00e-112	397.00
IUUC-Sre-115157	Sporisorium reilianum	30.61	4.00e-38	151.00
IUUC-Ssc-116386	Sus scrofa	39.42	4.00e-65	240.00
IUUC-Tgu-116465	Taeniopygia guttata	40.61	3.00e-56	212.00
IUUC-Tru-117604	Takifugu rubripes	41.31	3.00e-65	242.00
IUUC-Tni-120237	Tetraodon nigroviridis	40.98	6.00e-65	241.00
IUUC-Tca-121853	Theobroma cacao	80.55	2.00e-161	561.00
IUUC-Tre-122205	Trichoderma reesei	30.91	2.00e-39	155.00
IUUC-Tvi-122471	Trichoderma virens	27.58	2.00e-28	119.00
IUUC-Tae-125200	Triticum aestivum	77.60	5.00e-152	529.00
IUUC-Tme-126883	Tuber melanosporum	32.73	8.00e-45	173.00
IUUC-Ttr-128307	Tursiops truncatus	41.63	2.00e-60	224.00
IUUC-Uma-129579	Ustilago maydis	32.47	2.00e-43	168.00
IUUC-Vda-129826	Verticillium dahliae	31.90	5.00e-39	154.00
IUUC-Vpa-130091	Vicugna pacos	41.63	2.00e-60	224.00
IUUC-Vvi-131587	Vitis vinifera	81.63	2.00e-162	563.00
IUUC-Xma-133496	Xiphophorus maculatus	40.71	4.00e-67	247.00
IUUC-Yli-134509	Yarrowia lipolytica	31.33	2.00e-40	159.00
IUUC-Zma-134685	Zea mays	77.32	2.00e-149	520.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence