iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ang-009701

Ensembl Protein ID

CAL00687

UniProt Accession

A2QI22; YTM1_ASPNC

Genbank Protein ID

CAL00687.1

Protein Name

Ribosome biogenesis protein ytm1

Genbank Nucleotide ID

AM270071

Gene Name

ytm1; An04g02000

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
An04g02000	CAL00687	CAL00687

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.80e-25	85.8	385	418

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtl....lvsGsdDgtikvWDlr 31
           gHt+ v +l+  +  +    l+sGs+Dgt+++WD+r
   Q: 385  GHTNAVVSLSRdP--HssygLISGSHDGTCRIWDIR 418
           7888888887652..233469*************86 PP

Organism

Aspergillus niger

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MNGVQDSTSA AASSQSAQRQ VRVQLVSKQE DIALPESTGP ILVPTGLRRY ALSTLVNNLL 60
GNDKPVPFEF LINGAFLRTS IDEYLTANGI SAETTLEIEY IRALIPPLHI ASFEHDDWVG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAACGGCG TTCAGGATTC AACCTCTGCT GCGGCCTCGT CCCAGTCTGC GCAGAGGCAG 60
GTGCGCGTGC AGCTCGTTAG CAAGCAAGAA GACATTGCGC TGCCTGAGAG CACCGGCCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR002469--Peptidase_S9B_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0051276--P:chromosome organization
GO:0042273--P:ribosomal large subunit biogenesis
GO:0006364--P:rRNA processing

KEGG

ang:ANI_1_424184

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	32.08	6.00e-43	166.00
IUUC-Aml-001997	Ailuropoda melanoleuca	28.97	5.00e-35	140.00
IUUC-Atr-002544	Amborella trichopoda	28.89	5.00e-39	153.00
IUUC-Apl-003981	Anas platyrhynchos	30.41	2.00e-37	147.00
IUUC-Aca-004370	Anolis carolinensis	29.74	2.00e-41	161.00
IUUC-Aly-006455	Arabidopsis lyrata	29.89	4.00e-43	167.00
IUUC-Ath-006669	Arabidopsis thaliana	30.45	1.00e-39	155.00
IUUC-Ago-007864	Ashbya gossypii	43.04	9.00e-102	362.00
IUUC-Acl-008177	Aspergillus clavatus	87.05	0.00e+00	771.00
IUUC-Afl-008617	Aspergillus flavus	88.98	0.00e+00	774.00
IUUC-Afu-008752	Aspergillus fumigatus	86.84	0.00e+00	741.00
IUUC-Ani-009136	Aspergillus nidulans	84.76	0.00e+00	744.00
IUUC-Aor-009884	Aspergillus oryzae	89.19	0.00e+00	780.00
IUUC-Ate-010472	Aspergillus terreus	86.97	4.00e-149	518.00
IUUC-Ame-011432	Astyanax mexicanus	27.80	4.00e-42	163.00
IUUC-Bgr-012218	Blumeria graminis	57.05	3.00e-141	493.00
IUUC-Bta-012829	Bos taurus	27.80	1.00e-34	138.00
IUUC-Bci-013953	Botrytis cinerea	56.42	1.00e-150	524.00
IUUC-Bdi-014351	Brachypodium distachyon	31.34	3.00e-39	154.00
IUUC-Bol-016190	Brassica oleracea	31.68	3.00e-40	157.00
IUUC-Bra-016988	Brassica rapa	29.06	5.00e-40	156.00
IUUC-Cel-018569	Caenorhabditis elegans	24.15	4.00e-23	100.00
IUUC-Cja-019468	Callithrix jacchus	29.49	5.00e-35	140.00
IUUC-Cfa-020471	Canis familiaris	27.98	2.00e-32	131.00
IUUC-Cpo-022260	Cavia porcellus	28.05	1.00e-32	132.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	33.09	8.00e-45	172.00
IUUC-Csa-023989	Chlorocebus sabaeus	29.23	4.00e-34	137.00
IUUC-Cho-024426	Choloepus hoffmanni	26.75	7.00e-25	106.00
IUUC-Cin-025789	Ciona intestinalis	27.78	5.00e-36	143.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	48.69	5.00e-34	135.00
IUUC-Cne-027063	Cryptococcus neoformans	25.75	2.00e-31	128.00
IUUC-Dre-027907	Danio rerio	29.49	3.00e-43	167.00
IUUC-Dno-029225	Dasypus novemcinctus	29.49	6.00e-35	139.00
IUUC-Dor-031082	Dipodomys ordii	27.68	1.00e-14	72.80
IUUC-Dse-031308	Dothistroma septosporum	51.18	4.00e-128	449.00
IUUC-Dme-032189	Drosophila melanogaster	26.83	8.00e-38	149.00
IUUC-Ete-032247	Echinops telfairi	26.41	4.00e-28	117.00
IUUC-Eca-034285	Equus caballus	28.05	3.00e-34	137.00
IUUC-Eeu-035322	Erinaceus europaeus	25.37	7.00e-29	119.00
IUUC-Fca-036114	Felis catus	29.74	1.00e-35	142.00
IUUC-Fal-036891	Ficedula albicollis	29.90	6.00e-31	126.00
IUUC-Fox-037965	Fusarium oxysporum	49.37	6.00e-124	435.00
IUUC-Fso-038244	Fusarium solani	50.62	3.00e-125	439.00
IUUC-Gmo-039040	Gadus morhua	27.23	1.00e-42	165.00
IUUC-Ggr-040093	Gaeumannomyces graminis	45.92	8.00e-100	355.00
IUUC-Gga-040610	Gallus gallus	30.51	1.00e-39	155.00
IUUC-Gac-042117	Gasterosteus aculeatus	27.75	5.00e-41	159.00
IUUC-Gma-043756	Glycine max	33.01	1.00e-46	179.00
IUUC-Ggo-045179	Gorilla gorilla	29.74	7.00e-36	142.00
IUUC-Hsa-046114	Homo sapiens	29.49	7.00e-35	139.00
IUUC-Hvu-047331	Hordeum vulgare	29.89	5.00e-36	143.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	28.46	2.00e-34	137.00
IUUC-Kpa-049304	Komagataella pastoris	45.07	4.00e-109	386.00
IUUC-Lch-050655	Latimeria chalumnae	27.17	5.00e-28	116.00
IUUC-Lpe-051675	Leersia perrieri	29.46	2.00e-39	155.00
IUUC-Loc-052868	Lepisosteus oculatus	27.56	1.00e-40	158.00
IUUC-Lma-053258	Leptosphaeria maculans	53.94	3.00e-141	494.00
IUUC-Laf-053993	Loxodonta africana	27.98	9.00e-35	139.00
IUUC-Mcc-055128	Macaca mulatta	23.02	5.00e-20	90.10
IUUC-Meu-056501	Macropus eugenii	28.13	5.00e-31	126.00
IUUC-Mor-057114	Magnaporthe oryzae	50.21	1.00e-128	451.00
IUUC-Mpo-057463	Magnaporthe poae	46.99	2.00e-43	166.00
IUUC-Mtr-058367	Medicago truncatula	32.43	7.00e-41	159.00
IUUC-Mla-059107	Melampsora laricipopulina	28.88	2.00e-42	165.00
IUUC-Mga-059745	Meleagris gallopavo	30.51	8.00e-39	152.00
IUUC-Mvi-060362	Microbotryum violaceum	34.83	1.00e-21	96.30
IUUC-Mdo-062257	Monodelphis domestica	28.97	8.00e-38	149.00
IUUC-Mmu-063546	Mus musculus	28.78	5.00e-37	146.00
IUUC-Mac-065540	Musa acuminata	29.62	9.00e-38	149.00
IUUC-Mpu-066284	Mustela putorius furo	27.56	4.00e-35	140.00
IUUC-Mlu-067241	Myotis lucifugus	27.59	2.00e-34	138.00
IUUC-Nfi-068260	Neosartorya fischeri	87.69	0.00e+00	765.00
IUUC-Ncr-068719	Neurospora crassa	52.29	1.00e-125	441.00
IUUC-Nle-068981	Nomascus leucogenys	27.74	8.00e-34	135.00
IUUC-Opr-071218	Ochotona princeps	26.34	8.00e-35	139.00
IUUC-Ont-071646	Oreochromis niloticus	27.94	5.00e-38	150.00
IUUC-Oan-073453	Ornithorhynchus anatinus	26.11	1.00e-41	161.00
IUUC-Ocu-074008	Oryctolagus cuniculus	28.29	6.00e-36	143.00
IUUC-Oba-075712	Oryza barthii	27.78	2.00e-29	122.00
IUUC-Obr-076721	Oryza brachyantha	30.46	2.00e-40	158.00
IUUC-Ogl-077229	Oryza glaberrima	30.49	2.00e-42	164.00
IUUC-Ogu-078977	Oryza glumaepatula	27.56	4.00e-29	120.00
IUUC-Oin-079683	Oryza indica	29.85	4.00e-42	164.00
IUUC-Olo-080291	Oryza longistaminata	28.52	7.00e-23	99.40
IUUC-Ome-081834	Oryza meridionalis	30.43	1.00e-41	162.00
IUUC-Oni-082507	Oryza nivara	29.42	4.00e-36	143.00
IUUC-Opu-083396	Oryza punctata	30.28	2.00e-41	161.00
IUUC-Oru-085220	Oryza rufipogon	29.42	3.00e-36	144.00
IUUC-Osa-085767	Oryza sativa	29.85	4.00e-42	164.00
IUUC-Ola-087420	Oryzias latipes	26.92	3.00e-42	164.00
IUUC-Olu-087740	Ostreococcus lucimarinus	26.81	2.00e-31	128.00
IUUC-Oga-088264	Otolemur garnettii	27.59	5.00e-33	133.00
IUUC-Oar-089335	Ovis aries	27.34	7.00e-34	136.00
IUUC-Ptr-091320	Pan troglodytes	29.49	7.00e-35	139.00
IUUC-Pan-092833	Papio anubis	29.23	2.00e-34	138.00
IUUC-Psi-093504	Pelodiscus sinensis	29.74	4.00e-36	143.00
IUUC-Pma-094189	Petromyzon marinus	28.54	9.00e-37	145.00
IUUC-Pno-094929	Phaeosphaeria nodorum	52.56	2.00e-137	480.00
IUUC-Ppa-095429	Physcomitrella patens	32.48	4.00e-50	190.00
IUUC-Pfo-096337	Poecilia formosa	29.49	2.00e-42	164.00
IUUC-Pab-097571	Pongo abelii	28.54	8.00e-35	139.00
IUUC-Pop-099977	Populus trichocarpa	30.34	1.00e-40	158.00
IUUC-Pca-100394	Procavia capensis	26.61	1.00e-27	115.00
IUUC-Ppe-101848	Prunus persica	32.29	6.00e-45	172.00
IUUC-Pva-102921	Pteropus vampyrus	26.23	4.00e-15	73.90
IUUC-Pgr-103637	Puccinia graminis	28.11	6.00e-46	176.00
IUUC-Ptt-103781	Puccinia triticina	28.38	7.00e-49	186.00
IUUC-Pte-104135	Pyrenophora teres	55.26	3.00e-133	468.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	54.24	6.00e-131	458.00
IUUC-Rno-105114	Rattus norvegicus	28.05	2.00e-35	141.00
IUUC-Sce-106401	Saccharomyces cerevisiae	41.94	1.00e-102	364.00
IUUC-Sha-107122	Sarcophilus harrisii	28.57	7.00e-32	129.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	35.38	9.00e-79	285.00
IUUC-Spo-108134	Schizosaccharomyces pombe	38.00	6.00e-85	306.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	55.35	7.00e-152	528.00
IUUC-Smo-108720	Selaginella moellendorffii	27.54	5.00e-35	140.00
IUUC-Sit-110354	Setaria italica	29.93	4.00e-41	160.00
IUUC-Sly-111178	Solanum lycopersicum	30.63	4.00e-41	160.00
IUUC-Stu-112169	Solanum tuberosum	29.95	2.00e-42	164.00
IUUC-Sbi-114193	Sorghum bicolor	29.48	1.00e-38	152.00
IUUC-Sre-115002	Sporisorium reilianum	36.71	4.00e-30	124.00
IUUC-Ssc-116066	Sus scrofa	27.80	8.00e-34	136.00
IUUC-Tgu-117048	Taeniopygia guttata	30.68	4.00e-37	146.00
IUUC-Tni-119820	Tetraodon nigroviridis	26.48	1.00e-36	145.00
IUUC-Tca-121605	Theobroma cacao	29.73	2.00e-43	167.00
IUUC-Tre-121947	Trichoderma reesei	48.11	7.00e-120	422.00
IUUC-Tvi-122481	Trichoderma virens	48.32	9.00e-122	428.00
IUUC-Tae-123504	Triticum aestivum	31.81	2.00e-42	165.00
IUUC-Tur-126586	Triticum urartu	30.85	3.00e-37	147.00
IUUC-Tme-126900	Tuber melanosporum	45.57	4.00e-106	376.00
IUUC-Ttr-129041	Tursiops truncatus	23.59	9.00e-20	89.40
IUUC-Uma-129628	Ustilago maydis	31.30	2.00e-21	95.50
IUUC-Vpa-130260	Vicugna pacos	27.80	3.00e-35	140.00
IUUC-Vvi-131009	Vitis vinifera	33.65	3.00e-47	181.00
IUUC-Xtr-132083	Xenopus tropicalis	28.71	1.00e-40	158.00
IUUC-Xma-133094	Xiphophorus maculatus	27.75	6.00e-43	166.00
IUUC-Yli-134531	Yarrowia lipolytica	35.89	8.00e-72	262.00
IUUC-Zma-135509	Zea mays	30.62	2.00e-41	161.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence