iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pte-104135

Ensembl Protein ID

EFQ87423

UniProt Accession

E3S3L7; E3S3L7_PYRTT

Genbank Protein ID

EFQ87423.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

GL537013

Gene Name

YTM1; PTT_17076

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PTT_17076	EFQ87423	EFQ87423

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-22	78.4	1088	1127

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+++v+++ f  +d t   s+s+D+t+k WDl t +++ 
   Q: 1088 GHSSPVSSVIFkpDDaTVAYSASHDHTLKTWDLPTSTCVD 1127
           8***********6669******************999975 PP

Organism

Pyrenophora teres

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MPSQVSDALL GDALLQTVAY KRPPQDEHVA SAAVPSGALP KLLEVVHKAR EDTKDEVRRL 60
SREAAPDVDG WIAQARKLQD DIKRSQDTAK EIVQQAKAGA EVTARVQDAA SKVSLLHSEI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCGTCGC AAGTTTCAGA TGCGCTGCTA GGCGATGCGC TGCTTCAAAC AGTCGCATAC 60
AAAAGGCCTC CCCAGGACGA ACATGTGGCC TCCGCTGCAG TACCCTCGGG TGCCCTTCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR009361--RZZ-complex_Zw10
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40
PF06248--Zw10

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000775--C:chromosome, centromeric region
GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0007067--P:mitotic nuclear division

KEGG

pte:PTT_17076

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	29.61	3.00e-42	164.00
IUUC-Aml-001997	Ailuropoda melanoleuca	26.56	3.00e-33	134.00
IUUC-Atr-002544	Amborella trichopoda	30.77	6.00e-36	143.00
IUUC-Apl-003981	Anas platyrhynchos	26.89	7.00e-36	142.00
IUUC-Aca-004370	Anolis carolinensis	27.19	1.00e-38	152.00
IUUC-Aly-006455	Arabidopsis lyrata	28.41	6.00e-41	159.00
IUUC-Ath-006669	Arabidopsis thaliana	29.48	2.00e-40	158.00
IUUC-Ago-007864	Ashbya gossypii	42.24	3.00e-90	323.00
IUUC-Acl-008177	Aspergillus clavatus	54.59	6.00e-126	442.00
IUUC-Afl-008617	Aspergillus flavus	55.26	2.00e-125	440.00
IUUC-Afu-008752	Aspergillus fumigatus	54.36	3.00e-119	420.00
IUUC-Ani-009136	Aspergillus nidulans	55.38	3.00e-121	426.00
IUUC-Ang-009701	Aspergillus niger	55.93	2.00e-122	431.00
IUUC-Aor-009884	Aspergillus oryzae	55.03	6.00e-125	439.00
IUUC-Ate-010472	Aspergillus terreus	53.80	3.00e-77	280.00
IUUC-Ame-011432	Astyanax mexicanus	27.27	4.00e-37	147.00
IUUC-Bgr-012218	Blumeria graminis	47.62	3.00e-108	383.00
IUUC-Bta-012829	Bos taurus	26.32	1.00e-33	135.00
IUUC-Bci-013953	Botrytis cinerea	47.20	1.00e-112	397.00
IUUC-Bdi-014351	Brachypodium distachyon	30.30	1.00e-38	152.00
IUUC-Bol-016514	Brassica oleracea	29.70	2.00e-41	161.00
IUUC-Bra-017876	Brassica rapa	30.39	4.00e-43	167.00
IUUC-Cel-018569	Caenorhabditis elegans	24.50	5.00e-19	87.00
IUUC-Cja-019468	Callithrix jacchus	26.08	1.00e-32	132.00
IUUC-Cfa-020471	Canis familiaris	25.84	3.00e-31	127.00
IUUC-Cpo-022260	Cavia porcellus	26.32	4.00e-32	130.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	30.93	1.00e-35	141.00
IUUC-Csa-023989	Chlorocebus sabaeus	25.84	2.00e-31	127.00
IUUC-Cho-024426	Choloepus hoffmanni	27.05	4.00e-26	110.00
IUUC-Cin-025789	Ciona intestinalis	28.07	8.00e-30	122.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	54.35	2.00e-36	143.00
IUUC-Cne-027063	Cryptococcus neoformans	26.54	5.00e-27	114.00
IUUC-Dre-027907	Danio rerio	27.82	1.00e-38	152.00
IUUC-Dno-029225	Dasypus novemcinctus	26.08	2.00e-32	131.00
IUUC-Dse-031308	Dothistroma septosporum	47.47	5.00e-103	366.00
IUUC-Dme-032189	Drosophila melanogaster	25.70	4.00e-31	127.00
IUUC-Ete-032247	Echinops telfairi	24.10	2.00e-24	105.00
IUUC-Eca-034285	Equus caballus	25.84	2.00e-32	131.00
IUUC-Eeu-035322	Erinaceus europaeus	24.23	2.00e-25	108.00
IUUC-Fca-036114	Felis catus	26.08	4.00e-33	133.00
IUUC-Fal-036891	Ficedula albicollis	28.17	9.00e-33	132.00
IUUC-Fox-037965	Fusarium oxysporum	46.35	2.00e-100	357.00
IUUC-Fso-038244	Fusarium solani	45.59	3.00e-101	360.00
IUUC-Gmo-039040	Gadus morhua	28.10	2.00e-40	158.00
IUUC-Ggr-040093	Gaeumannomyces graminis	42.00	9.00e-80	289.00
IUUC-Gga-040610	Gallus gallus	28.44	5.00e-39	153.00
IUUC-Gac-042117	Gasterosteus aculeatus	27.83	3.00e-37	147.00
IUUC-Gma-043756	Glycine max	31.63	6.00e-44	169.00
IUUC-Ggo-045179	Gorilla gorilla	26.08	7.00e-33	132.00
IUUC-Hsa-046114	Homo sapiens	26.08	4.00e-32	130.00
IUUC-Hvu-047331	Hordeum vulgare	29.79	7.00e-37	146.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	25.36	4.00e-32	130.00
IUUC-Kpa-049304	Komagataella pastoris	40.59	1.00e-86	311.00
IUUC-Lch-050655	Latimeria chalumnae	27.94	4.00e-28	117.00
IUUC-Lpe-051675	Leersia perrieri	30.73	7.00e-43	166.00
IUUC-Loc-052868	Lepisosteus oculatus	27.03	8.00e-38	149.00
IUUC-Lma-053258	Leptosphaeria maculans	65.83	0.00e+00	1071.00
IUUC-Laf-053993	Loxodonta africana	26.74	3.00e-32	130.00
IUUC-Mcc-055128	Macaca mulatta	22.22	4.00e-16	77.40
IUUC-Meu-056501	Macropus eugenii	27.99	6.00e-32	129.00
IUUC-Mor-057114	Magnaporthe oryzae	45.42	9.00e-103	365.00
IUUC-Mpo-057463	Magnaporthe poae	39.34	4.00e-33	132.00
IUUC-Mtr-058367	Medicago truncatula	30.16	3.00e-38	150.00
IUUC-Mla-059107	Melampsora laricipopulina	28.42	1.00e-34	139.00
IUUC-Mga-059745	Meleagris gallopavo	28.44	4.00e-39	154.00
IUUC-Mvi-060362	Microbotryum violaceum	27.39	3.00e-31	127.00
IUUC-Mdo-062257	Monodelphis domestica	27.25	1.00e-37	149.00
IUUC-Mmu-063546	Mus musculus	26.57	2.00e-33	134.00
IUUC-Mac-065540	Musa acuminata	29.98	7.00e-38	149.00
IUUC-Mpu-066284	Mustela putorius furo	26.32	2.00e-33	135.00
IUUC-Mlu-067241	Myotis lucifugus	25.84	1.00e-32	132.00
IUUC-Nfi-068260	Neosartorya fischeri	54.81	2.00e-123	433.00
IUUC-Ncr-068719	Neurospora crassa	44.93	8.00e-93	332.00
IUUC-Nle-068981	Nomascus leucogenys	25.84	3.00e-32	130.00
IUUC-Opr-071218	Ochotona princeps	26.17	9.00e-31	125.00
IUUC-Ont-071646	Oreochromis niloticus	27.12	6.00e-36	143.00
IUUC-Oan-073453	Ornithorhynchus anatinus	26.07	5.00e-39	153.00
IUUC-Ocu-074008	Oryctolagus cuniculus	25.60	4.00e-33	133.00
IUUC-Oba-075712	Oryza barthii	26.91	3.00e-27	114.00
IUUC-Obr-076721	Oryza brachyantha	30.98	4.00e-44	170.00
IUUC-Ogl-077229	Oryza glaberrima	30.50	3.00e-43	167.00
IUUC-Ogu-078977	Oryza glumaepatula	27.15	1.00e-27	115.00
IUUC-Oin-079683	Oryza indica	30.73	3.00e-44	171.00
IUUC-Olo-080291	Oryza longistaminata	30.42	4.00e-26	109.00
IUUC-Ome-081834	Oryza meridionalis	31.25	1.00e-43	169.00
IUUC-Oni-082507	Oryza nivara	29.63	7.00e-37	146.00
IUUC-Opu-083396	Oryza punctata	30.28	3.00e-41	161.00
IUUC-Oru-085220	Oryza rufipogon	29.63	4.00e-37	147.00
IUUC-Osa-085767	Oryza sativa	30.73	3.00e-44	171.00
IUUC-Ola-087420	Oryzias latipes	27.03	3.00e-40	157.00
IUUC-Olu-087740	Ostreococcus lucimarinus	28.53	3.00e-30	124.00
IUUC-Oga-088264	Otolemur garnettii	25.84	6.00e-33	133.00
IUUC-Oar-089335	Ovis aries	25.84	8.00e-33	132.00
IUUC-Ptr-091320	Pan troglodytes	26.08	4.00e-32	130.00
IUUC-Pan-092833	Papio anubis	26.08	8.00e-32	129.00
IUUC-Psi-093504	Pelodiscus sinensis	27.01	4.00e-34	137.00
IUUC-Pma-094189	Petromyzon marinus	31.04	5.00e-36	143.00
IUUC-Pno-094929	Phaeosphaeria nodorum	83.41	0.00e+00	721.00
IUUC-Ppa-095429	Physcomitrella patens	33.03	8.00e-45	172.00
IUUC-Pfo-096337	Poecilia formosa	26.79	1.00e-38	152.00
IUUC-Pab-097571	Pongo abelii	26.08	5.00e-32	130.00
IUUC-Pop-099977	Populus trichocarpa	32.41	3.00e-45	174.00
IUUC-Pca-100394	Procavia capensis	24.16	3.00e-27	114.00
IUUC-Ppe-101848	Prunus persica	32.88	4.00e-42	164.00
IUUC-Pgr-103637	Puccinia graminis	26.86	2.00e-35	141.00
IUUC-Ptt-103781	Puccinia triticina	26.42	5.00e-35	140.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	98.13	0.00e+00	834.00
IUUC-Rno-105114	Rattus norvegicus	25.84	1.00e-31	129.00
IUUC-Sce-106401	Saccharomyces cerevisiae	41.69	2.00e-90	324.00
IUUC-Sha-107122	Sarcophilus harrisii	26.67	6.00e-32	130.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	37.10	7.00e-74	269.00
IUUC-Spo-108134	Schizosaccharomyces pombe	36.55	2.00e-66	244.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	48.77	1.00e-117	415.00
IUUC-Smo-108720	Selaginella moellendorffii	28.15	1.00e-33	135.00
IUUC-Sit-110354	Setaria italica	29.16	4.00e-40	157.00
IUUC-Sly-111023	Solanum lycopersicum	27.99	3.00e-40	157.00
IUUC-Stu-112169	Solanum tuberosum	29.15	4.00e-43	167.00
IUUC-Sbi-114193	Sorghum bicolor	30.07	1.00e-41	162.00
IUUC-Sre-115002	Sporisorium reilianum	28.78	3.00e-30	124.00
IUUC-Ssc-116066	Sus scrofa	26.08	2.00e-33	134.00
IUUC-Tgu-117048	Taeniopygia guttata	28.12	3.00e-38	150.00
IUUC-Tni-119820	Tetraodon nigroviridis	28.20	2.00e-36	144.00
IUUC-Tca-121605	Theobroma cacao	30.14	5.00e-41	160.00
IUUC-Tre-121947	Trichoderma reesei	41.96	4.00e-94	336.00
IUUC-Tvi-122481	Trichoderma virens	42.16	1.00e-94	338.00
IUUC-Tae-123847	Triticum aestivum	29.61	3.00e-42	164.00
IUUC-Tur-126586	Triticum urartu	29.03	9.00e-40	155.00
IUUC-Tme-126900	Tuber melanosporum	43.90	2.00e-93	334.00
IUUC-Tbe-127736	Tupaia belangeri	22.12	2.00e-14	71.60
IUUC-Uma-129628	Ustilago maydis	27.48	1.00e-21	95.90
IUUC-Vpa-130260	Vicugna pacos	25.84	1.00e-32	132.00
IUUC-Vvi-131009	Vitis vinifera	31.88	3.00e-43	167.00
IUUC-Xtr-132083	Xenopus tropicalis	27.70	8.00e-39	152.00
IUUC-Xma-133094	Xiphophorus maculatus	27.25	9.00e-39	152.00
IUUC-Yli-134531	Yarrowia lipolytica	35.00	9.00e-51	192.00
IUUC-Zma-135509	Zea mays	29.61	4.00e-41	160.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence