iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Oru-084492

Ensembl Protein ID

ORUFI05G00330.1

UniProt Accession

A0A0E0PGD8; A0A0E0PGD8_ORYRU

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ORUFI05G00330	ORUFI05G00330.1	ORUFI05G00330.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	38.93	3.00e-49	192.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Oryza rufipogon

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MAAAEGPVLL FPSTSSTSAR VEAVVVFNIC DSYVRRPDQA ERVIGTLLGS VLPDGTVHVR 60
NSYVVPHNES PDQVALDIEY HHNMYASHHK VNPKEVIVGW FSTGFGVSGG STLIHDFYSR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTGCGG CGGAGGGCCC CGTTCTCCTC TTCCCCTCTA CCTCGTCGAC GTCCGCCCGG 60
GTGGAGGCGG TCGTCGTGTT CAACATCTGC GACAGCTACG TGCGCCGCCC CGACCAGGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0005829--C:cytosol
GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0016020--C:membrane
GO:0005634--C:nucleus
GO:0003743--F:translation initiation factor activity
GO:0009793--P:embryo development ending in seed dormancy
GO:0001731--P:formation of translation preinitiation complex
GO:0009846--P:pollen germination
GO:0006446--P:regulation of translational initiation
GO:0009744--P:response to sucrose

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	77.99	2.00e-128	451.00
IUUC-Aml-001527	Ailuropoda melanoleuca	39.54	2.00e-55	208.00
IUUC-Atr-002686	Amborella trichopoda	70.42	1.00e-106	378.00
IUUC-Apl-003977	Anas platyrhynchos	37.56	4.00e-46	177.00
IUUC-Aca-004335	Anolis carolinensis	38.87	7.00e-57	213.00
IUUC-Aly-005945	Arabidopsis lyrata	72.83	8.00e-111	392.00
IUUC-Ath-007045	Arabidopsis thaliana	72.45	2.00e-109	387.00
IUUC-Acl-008365	Aspergillus clavatus	35.17	5.00e-45	174.00
IUUC-Afl-008742	Aspergillus flavus	34.97	2.00e-43	169.00
IUUC-Afu-009030	Aspergillus fumigatus	35.52	9.00e-46	176.00
IUUC-Ani-009212	Aspergillus nidulans	35.69	5.00e-45	174.00
IUUC-Ang-009712	Aspergillus niger	35.17	3.00e-44	171.00
IUUC-Aor-009885	Aspergillus oryzae	35.31	2.00e-44	172.00
IUUC-Ate-010315	Aspergillus terreus	35.17	1.00e-43	169.00
IUUC-Ame-010801	Astyanax mexicanus	47.00	4.00e-20	91.30
IUUC-Bgr-011982	Blumeria graminis	34.27	1.00e-42	166.00
IUUC-Bta-012804	Bos taurus	38.99	1.00e-56	213.00
IUUC-Bci-013891	Botrytis cinerea	33.22	8.00e-36	143.00
IUUC-Bdi-014328	Brachypodium distachyon	84.84	4.00e-129	453.00
IUUC-Bol-015446	Brassica oleracea	69.76	2.00e-114	404.00
IUUC-Bra-016862	Brassica rapa	69.07	6.00e-113	399.00
IUUC-Cel-018171	Caenorhabditis elegans	27.80	3.00e-27	114.00
IUUC-Cja-019335	Callithrix jacchus	39.54	3.00e-55	208.00
IUUC-Cfa-020138	Canis familiaris	39.16	6.00e-55	207.00
IUUC-Cpo-022109	Cavia porcellus	36.67	3.00e-45	175.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	42.76	4.00e-64	237.00
IUUC-Csa-023994	Chlorocebus sabaeus	39.54	3.00e-55	208.00
IUUC-Cho-024351	Choloepus hoffmanni	29.66	1.00e-30	126.00
IUUC-Cin-025801	Ciona intestinalis	38.64	1.00e-52	199.00
IUUC-Csv-025805	Ciona savignyi	39.02	9.00e-53	199.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	29.33	6.00e-33	134.00
IUUC-Cne-026868	Cryptococcus neoformans	27.89	1.00e-21	96.70
IUUC-Cme-027328	Cyanidioschyzon merolae	26.32	9.00e-20	90.50
IUUC-Dre-028085	Danio rerio	37.94	4.00e-55	207.00
IUUC-Dno-030099	Dasypus novemcinctus	39.54	4.00e-55	207.00
IUUC-Dor-030324	Dipodomys ordii	34.98	6.00e-45	174.00
IUUC-Dse-031314	Dothistroma septosporum	33.92	7.00e-44	170.00
IUUC-Dme-031926	Drosophila melanogaster	37.23	2.00e-50	192.00
IUUC-Ete-032569	Echinops telfairi	38.18	3.00e-52	197.00
IUUC-Eca-033502	Equus caballus	36.82	3.00e-50	191.00
IUUC-Eeu-034883	Erinaceus europaeus	31.32	2.00e-24	104.00
IUUC-Fca-035873	Felis catus	39.54	2.00e-55	208.00
IUUC-Fal-036921	Ficedula albicollis	39.92	2.00e-56	211.00
IUUC-Fox-037765	Fusarium oxysporum	30.43	2.00e-28	119.00
IUUC-Fso-038240	Fusarium solani	30.47	2.00e-29	122.00
IUUC-Gmo-038864	Gadus morhua	38.49	2.00e-56	211.00
IUUC-Ggr-039862	Gaeumannomyces graminis	29.75	8.00e-29	120.00
IUUC-Gga-040952	Gallus gallus	39.92	2.00e-56	212.00
IUUC-Gac-041677	Gasterosteus aculeatus	40.93	9.00e-61	226.00
IUUC-Gma-043061	Glycine max	74.74	2.00e-109	387.00
IUUC-Ggo-045591	Gorilla gorilla	39.54	3.00e-55	208.00
IUUC-Hsa-046860	Homo sapiens	39.54	3.00e-55	208.00
IUUC-Hvu-047410	Hordeum vulgare	86.49	4.00e-75	272.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	39.92	7.00e-56	210.00
IUUC-Lch-049410	Latimeria chalumnae	36.95	7.00e-34	136.00
IUUC-Lpe-051102	Leersia perrieri	96.47	9.00e-143	498.00
IUUC-Loc-052016	Lepisosteus oculatus	36.88	1.00e-46	179.00
IUUC-Lma-053157	Leptosphaeria maculans	33.91	4.00e-45	174.00
IUUC-Laf-054568	Loxodonta africana	39.54	5.00e-55	207.00
IUUC-Mcc-054613	Macaca mulatta	39.54	3.00e-55	208.00
IUUC-Meu-056832	Macropus eugenii	22.71	4.00e-17	80.50
IUUC-Mor-057104	Magnaporthe oryzae	30.47	8.00e-31	127.00
IUUC-Mtr-058445	Medicago truncatula	75.35	4.00e-126	443.00
IUUC-Mla-059038	Melampsora laricipopulina	30.58	8.00e-33	133.00
IUUC-Mga-059548	Meleagris gallopavo	38.33	2.00e-48	184.00
IUUC-Mvi-060520	Microbotryum violaceum	25.59	4.00e-19	88.20
IUUC-Mdo-062376	Monodelphis domestica	39.16	4.00e-56	211.00
IUUC-Mmu-063254	Mus musculus	39.92	5.00e-56	211.00
IUUC-Mac-065635	Musa acuminata	71.68	4.00e-114	403.00
IUUC-Mpu-066314	Mustela putorius furo	39.54	2.00e-55	208.00
IUUC-Mlu-067512	Myotis lucifugus	39.54	1.00e-55	209.00
IUUC-Nfi-068262	Neosartorya fischeri	35.52	9.00e-46	176.00
IUUC-Ncr-068872	Neurospora crassa	31.03	9.00e-33	133.00
IUUC-Nle-070118	Nomascus leucogenys	39.54	2.00e-55	208.00
IUUC-Opr-071228	Ochotona princeps	37.89	7.00e-48	183.00
IUUC-Ont-072600	Oreochromis niloticus	39.16	1.00e-58	218.00
IUUC-Oan-073584	Ornithorhynchus anatinus	37.89	3.00e-48	184.00
IUUC-Ocu-074542	Oryctolagus cuniculus	39.54	8.00e-56	210.00
IUUC-Oba-075923	Oryza barthii	100.00	2.00e-156	544.00
IUUC-Obr-076313	Oryza brachyantha	97.54	3.00e-144	503.00
IUUC-Ogl-076932	Oryza glaberrima	100.00	2.00e-156	544.00
IUUC-Ogu-078152	Oryza glumaepatula	100.00	2.00e-156	544.00
IUUC-Oin-079528	Oryza indica	100.00	2.00e-156	544.00
IUUC-Olo-080401	Oryza longistaminata	100.00	2.00e-156	544.00
IUUC-Ome-081553	Oryza meridionalis	99.65	4.00e-156	542.00
IUUC-Oni-082090	Oryza nivara	99.65	5.00e-156	542.00
IUUC-Opu-083583	Oryza punctata	98.59	3.00e-146	509.00
IUUC-Osa-085383	Oryza sativa	100.00	2.00e-156	544.00
IUUC-Ola-086835	Oryzias latipes	39.92	1.00e-58	219.00
IUUC-Olu-087716	Ostreococcus lucimarinus	35.58	1.00e-41	162.00
IUUC-Oga-088886	Otolemur garnettii	39.16	3.00e-55	208.00
IUUC-Oar-090079	Ovis aries	38.99	1.00e-56	213.00
IUUC-Ptr-091457	Pan troglodytes	39.54	3.00e-55	208.00
IUUC-Pan-092317	Papio anubis	33.52	2.00e-30	124.00
IUUC-Psi-093129	Pelodiscus sinensis	36.58	6.00e-50	190.00
IUUC-Pma-094488	Petromyzon marinus	40.30	1.00e-59	222.00
IUUC-Pno-095049	Phaeosphaeria nodorum	34.26	1.00e-46	179.00
IUUC-Ppa-095341	Physcomitrella patens	57.91	1.00e-100	358.00
IUUC-Pfo-096286	Poecilia formosa	38.27	1.00e-58	219.00
IUUC-Pab-097765	Pongo abelii	39.54	3.00e-55	208.00
IUUC-Pop-099131	Populus trichocarpa	74.56	3.00e-120	424.00
IUUC-Pca-100524	Procavia capensis	30.53	1.00e-30	125.00
IUUC-Ppe-101934	Prunus persica	74.48	2.00e-126	444.00
IUUC-Pva-102577	Pteropus vampyrus	39.92	7.00e-56	210.00
IUUC-Pgr-103521	Puccinia graminis	29.68	2.00e-32	132.00
IUUC-Pte-104304	Pyrenophora teres	33.91	3.00e-46	178.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	33.91	7.00e-46	177.00
IUUC-Rno-105717	Rattus norvegicus	39.92	4.00e-56	211.00
IUUC-Sha-107190	Sarcophilus harrisii	39.38	2.00e-55	208.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	33.33	2.00e-40	158.00
IUUC-Spo-108355	Schizosaccharomyces pombe	32.61	5.00e-40	157.00
IUUC-Smo-109374	Selaginella moellendorffii	62.41	2.00e-104	371.00
IUUC-Sit-110119	Setaria italica	92.08	6.00e-136	475.00
IUUC-Sly-111570	Solanum lycopersicum	72.28	1.00e-106	378.00
IUUC-Stu-112308	Solanum tuberosum	72.98	3.00e-116	410.00
IUUC-Sar-113515	Sorex araneus	34.74	9.00e-14	69.30
IUUC-Sbi-114605	Sorghum bicolor	87.20	9.00e-135	472.00
IUUC-Sre-114906	Sporisorium reilianum	35.40	3.00e-42	164.00
IUUC-Tgu-117087	Taeniopygia guttata	37.89	3.00e-48	184.00
IUUC-Tru-117700	Takifugu rubripes	40.30	1.00e-60	226.00
IUUC-Tni-120470	Tetraodon nigroviridis	39.54	2.00e-58	218.00
IUUC-Tca-121109	Theobroma cacao	75.87	1.00e-113	401.00
IUUC-Tre-122095	Trichoderma reesei	30.71	1.00e-29	123.00
IUUC-Tvi-122580	Trichoderma virens	30.36	8.00e-29	120.00
IUUC-Tae-125129	Triticum aestivum	86.67	2.00e-135	474.00
IUUC-Tur-126658	Triticum urartu	77.32	2.00e-119	421.00
IUUC-Tme-127043	Tuber melanosporum	34.71	4.00e-44	171.00
IUUC-Tbe-127927	Tupaia belangeri	39.54	2.00e-55	208.00
IUUC-Ttr-129231	Tursiops truncatus	39.54	1.00e-55	209.00
IUUC-Uma-129578	Ustilago maydis	35.04	1.00e-40	159.00
IUUC-Vda-129730	Verticillium dahliae	29.71	2.00e-32	132.00
IUUC-Vpa-130677	Vicugna pacos	45.95	1.20e-02	33.50
IUUC-Vvi-130968	Vitis vinifera	74.65	4.00e-120	423.00
IUUC-Xtr-132203	Xenopus tropicalis	39.16	2.00e-53	201.00
IUUC-Xma-133972	Xiphophorus maculatus	38.78	6.00e-58	216.00
IUUC-Yli-134553	Yarrowia lipolytica	31.77	2.00e-33	135.00
IUUC-Zma-134941	Zea mays	88.68	9.00e-123	432.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence