iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ssc-115929

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CU468902

Gene Name

WDR3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000006727.2	ENSSSCT00000007369.2	ENSSSCP00000007174.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.70e-45	149.0	673	703
UBD/Beta-Prp	3.80e-94	315.5	34	220

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWD 29
           gH  +++cla  ++ +++vs+s+D+++++W+
   Q: 673  GHHQEIWCLAIsPSgDYVVSSSHDKSLRLWE 703
           78899*******666***************8 PP

UBD/Beta-Prp

   S: 63   dgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnl 151
           ++  +v +   +++ +wdl++g+ + +l+g +++v++l  sp+g +l++G +d  ir++ l +g+    t++gh+++v+++++++ g  
   Q: 34   EKGRYVAVPACEHVFIWDLRKGEKILILQGLKHEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSGEGNV-TFNGHKAAVTSLKYDQLGGR 121
           5555566666677889*************************************************999.******************** PP
   S: 152  lvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsg 240
           l+sGs+D+ + +Wd+ +++ l++l+g h+d+++   f ++++ lvs ++d+ vk wdl t++c +t+ gh++ v+ + + ++++rl++g
   Q: 122  LASGSKDTDIIVWDVINESGLYRLKG-HKDAITQALFLREKNLLVSSGKDTMVKWWDLDTQHCFKTVVGHRTEVWGLVLVSEEKRLITG 209
           ************************99.************************************************************** PP
   S: 241  ssDgsiriWdl 251
           +sD  +r Wd+
   Q: 210  ASDSELRAWDI 220
           *********97 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MGLTKQYLRY VASAVFGLIG SQKGNIVFVT LRGEKGRYVA VPACEHVFIW DLRKGEKILI 60
LQGLKHEVTC LCPSPDGLHL AVGYEDGSIR IFSLLSGEGN VTFNGHKAAV TSLKYDQLGG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACCTGGAGCG GACCCGGAAG GGGTGGGCCC AGTGGGCGGG TCCAATCAGC CCAGAACCTC 60
GTGGAGGCCC AGGTGCGTGC AGTGGTCTCG CGGTGGCAGA TCGTCTTTGC TCCGCTCCTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR011043--Gal_Oxase/kelch_b-propeller
IPR011047--Quinoprotein_ADH-like_supfam
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0031965--C:nuclear membrane
GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000784	Aegilops tauschii	37.60	1.00e-150	527.00
IUUC-Aml-001245	Ailuropoda melanoleuca	93.96	0.00e+00	1646.00
IUUC-Atr-002700	Amborella trichopoda	39.41	2.00e-175	609.00
IUUC-Apl-004164	Anas platyrhynchos	74.32	0.00e+00	1041.00
IUUC-Aca-004765	Anolis carolinensis	74.95	0.00e+00	1376.00
IUUC-Aly-006503	Arabidopsis lyrata	39.55	2.00e-179	622.00
IUUC-Ath-006848	Arabidopsis thaliana	39.87	0.00e+00	631.00
IUUC-Ago-007909	Ashbya gossypii	35.18	6.00e-146	511.00
IUUC-Acl-008238	Aspergillus clavatus	38.83	0.00e+00	629.00
IUUC-Afl-008544	Aspergillus flavus	39.03	2.00e-176	613.00
IUUC-Afu-008868	Aspergillus fumigatus	39.03	0.00e+00	627.00
IUUC-Ani-009367	Aspergillus nidulans	38.38	4.00e-174	605.00
IUUC-Ang-009732	Aspergillus niger	37.79	1.00e-167	583.00
IUUC-Aor-010140	Aspergillus oryzae	39.10	5.00e-177	614.00
IUUC-Ate-010572	Aspergillus terreus	38.54	3.00e-177	616.00
IUUC-Ame-010956	Astyanax mexicanus	62.61	0.00e+00	1115.00
IUUC-Bgr-012296	Blumeria graminis	36.91	3.00e-170	592.00
IUUC-Bta-012716	Bos taurus	94.80	0.00e+00	1716.00
IUUC-Bci-013699	Botrytis cinerea	36.75	5.00e-161	561.00
IUUC-Bdi-014525	Brachypodium distachyon	37.32	1.00e-160	560.00
IUUC-Bol-015117	Brassica oleracea	38.91	3.00e-173	602.00
IUUC-Bra-016869	Brassica rapa	39.01	4.00e-174	605.00
IUUC-Cel-018570	Caenorhabditis elegans	34.98	8.00e-133	467.00
IUUC-Cja-019425	Callithrix jacchus	92.17	0.00e+00	1627.00
IUUC-Cfa-020787	Canis familiaris	92.90	0.00e+00	1659.00
IUUC-Cpo-021729	Cavia porcellus	92.94	0.00e+00	1184.00
IUUC-Cre-022678	Chlamydomonas reinhardtii	41.71	1.00e-106	380.00
IUUC-Csa-024098	Chlorocebus sabaeus	93.53	0.00e+00	1652.00
IUUC-Cho-024495	Choloepus hoffmanni	78.42	0.00e+00	933.00
IUUC-Cin-025245	Ciona intestinalis	48.81	3.00e-164	571.00
IUUC-Cgl-026708	Colletotrichum gloeosporioides	38.36	1.00e-165	576.00
IUUC-Cne-026835	Cryptococcus neoformans	45.64	7.00e-127	447.00
IUUC-Cme-027162	Cyanidioschyzon merolae	27.59	1.00e-38	154.00
IUUC-Dre-027874	Danio rerio	70.40	0.00e+00	1268.00
IUUC-Dno-028905	Dasypus novemcinctus	92.15	0.00e+00	1654.00
IUUC-Dor-030383	Dipodomys ordii	88.45	0.00e+00	788.00
IUUC-Dse-031297	Dothistroma septosporum	37.23	5.00e-166	578.00
IUUC-Dme-031956	Drosophila melanogaster	41.76	0.00e+00	679.00
IUUC-Ete-032608	Echinops telfairi	81.85	0.00e+00	898.00
IUUC-Eca-034181	Equus caballus	93.85	0.00e+00	1661.00
IUUC-Eeu-034495	Erinaceus europaeus	93.16	0.00e+00	1586.00
IUUC-Fca-035994	Felis catus	93.41	0.00e+00	1550.00
IUUC-Fal-036611	Ficedula albicollis	77.44	0.00e+00	1326.00
IUUC-Fox-037807	Fusarium oxysporum	37.37	2.00e-169	589.00
IUUC-Fso-038090	Fusarium solani	37.27	3.00e-166	578.00
IUUC-Gmo-039018	Gadus morhua	63.38	0.00e+00	696.00
IUUC-Ggr-039748	Gaeumannomyces graminis	37.37	1.00e-168	587.00
IUUC-Gga-040707	Gallus gallus	80.48	0.00e+00	1349.00
IUUC-Gac-042334	Gasterosteus aculeatus	64.09	0.00e+00	675.00
IUUC-Gma-043860	Glycine max	37.76	1.00e-170	593.00
IUUC-Ggo-045334	Gorilla gorilla	93.33	0.00e+00	1626.00
IUUC-Hsa-046996	Homo sapiens	93.53	0.00e+00	1627.00
IUUC-Hvu-047381	Hordeum vulgare	33.67	3.00e-88	318.00
IUUC-Itr-047938	Ictidomys tridecemlineatus	92.15	0.00e+00	1640.00
IUUC-Kpa-049185	Komagataella pastoris	35.29	3.00e-151	529.00
IUUC-Lch-050098	Latimeria chalumnae	66.77	0.00e+00	1136.00
IUUC-Lpe-050710	Leersia perrieri	36.61	8.00e-163	567.00
IUUC-Loc-052745	Lepisosteus oculatus	68.10	0.00e+00	1192.00
IUUC-Lma-053104	Leptosphaeria maculans	38.06	4.00e-175	609.00
IUUC-Laf-054395	Loxodonta africana	92.05	0.00e+00	1639.00
IUUC-Mcc-055077	Macaca mulatta	93.53	0.00e+00	1645.00
IUUC-Meu-056418	Macropus eugenii	82.73	0.00e+00	746.00
IUUC-Mor-057031	Magnaporthe oryzae	37.98	2.00e-155	543.00
IUUC-Mpo-057420	Magnaporthe poae	37.09	6.00e-166	577.00
IUUC-Mtr-057838	Medicago truncatula	38.32	0.00e+00	631.00
IUUC-Mla-058854	Melampsora laricipopulina	36.88	3.00e-159	555.00
IUUC-Mga-060120	Meleagris gallopavo	74.95	0.00e+00	1262.00
IUUC-Mvi-060407	Microbotryum violaceum	43.28	1.00e-134	474.00
IUUC-Mmr-060635	Microcebus murinus	92.06	0.00e+00	1610.00
IUUC-Mdo-063023	Monodelphis domestica	86.64	0.00e+00	1580.00
IUUC-Mmu-064103	Mus musculus	89.51	0.00e+00	1613.00
IUUC-Mac-065569	Musa acuminata	38.52	6.00e-171	594.00
IUUC-Mpu-066462	Mustela putorius furo	93.85	0.00e+00	1675.00
IUUC-Mlu-067894	Myotis lucifugus	93.85	0.00e+00	1677.00
IUUC-Nfi-068321	Neosartorya fischeri	39.00	1.00e-178	620.00
IUUC-Ncr-068661	Neurospora crassa	37.36	6.00e-166	577.00
IUUC-Nle-069409	Nomascus leucogenys	93.53	0.00e+00	1642.00
IUUC-Opr-070445	Ochotona princeps	83.07	0.00e+00	1523.00
IUUC-Ont-072339	Oreochromis niloticus	69.70	0.00e+00	1231.00
IUUC-Oan-073688	Ornithorhynchus anatinus	77.01	0.00e+00	1358.00
IUUC-Ocu-074227	Oryctolagus cuniculus	94.17	0.00e+00	1689.00
IUUC-Oba-075635	Oryza barthii	36.84	1.00e-157	550.00
IUUC-Obr-076897	Oryza brachyantha	37.92	6.00e-169	587.00
IUUC-Ogl-077555	Oryza glaberrima	36.74	2.00e-157	549.00
IUUC-Ogu-078724	Oryza glumaepatula	36.84	8.00e-159	554.00
IUUC-Oin-080030	Oryza indica	36.84	1.00e-157	550.00
IUUC-Olo-080687	Oryza longistaminata	34.88	4.00e-146	512.00
IUUC-Ome-081867	Oryza meridionalis	36.95	2.00e-158	553.00
IUUC-Oni-082559	Oryza nivara	36.84	1.00e-157	550.00
IUUC-Opu-083332	Oryza punctata	39.34	4.00e-148	518.00
IUUC-Oru-084455	Oryza rufipogon	36.84	7.00e-158	551.00
IUUC-Osa-085793	Oryza sativa	36.84	7.00e-158	551.00
IUUC-Ola-087395	Oryzias latipes	68.47	0.00e+00	1135.00
IUUC-Olu-087768	Ostreococcus lucimarinus	37.80	4.00e-159	555.00
IUUC-Oga-088574	Otolemur garnettii	93.21	0.00e+00	1665.00
IUUC-Oar-089453	Ovis aries	92.70	0.00e+00	1700.00
IUUC-Ptr-090694	Pan troglodytes	93.32	0.00e+00	1622.00
IUUC-Pan-092420	Papio anubis	93.23	0.00e+00	1639.00
IUUC-Psi-093683	Pelodiscus sinensis	82.06	0.00e+00	1472.00
IUUC-Pma-094197	Petromyzon marinus	56.14	1.00e-70	259.00
IUUC-Pno-094783	Phaeosphaeria nodorum	37.30	1.00e-171	596.00
IUUC-Ppa-095208	Physcomitrella patens	39.70	1.00e-175	610.00
IUUC-Pfo-096299	Poecilia formosa	69.29	0.00e+00	1244.00
IUUC-Pab-098706	Pongo abelii	93.53	0.00e+00	1630.00
IUUC-Pop-099275	Populus trichocarpa	38.15	4.00e-172	598.00
IUUC-Pca-100796	Procavia capensis	76.82	0.00e+00	1218.00
IUUC-Ppe-101861	Prunus persica	39.87	4.00e-178	618.00
IUUC-Pva-103241	Pteropus vampyrus	87.70	0.00e+00	1481.00
IUUC-Pgr-103432	Puccinia graminis	37.10	3.00e-156	545.00
IUUC-Ptt-103742	Puccinia triticina	41.12	4.00e-106	379.00
IUUC-Pte-104069	Pyrenophora teres	37.36	1.00e-164	573.00
IUUC-Pyt-104650	Pyrenophora triticirepentis	37.36	1.00e-171	597.00
IUUC-Rno-105219	Rattus norvegicus	89.09	0.00e+00	1569.00
IUUC-Sce-106271	Saccharomyces cerevisiae	37.64	7.00e-159	554.00
IUUC-Sha-107550	Sarcophilus harrisii	86.60	0.00e+00	1574.00
IUUC-Sja-107664	Schizosaccharomyces japonicus	38.34	2.00e-162	566.00
IUUC-Spo-108239	Schizosaccharomyces pombe	37.70	3.00e-169	588.00
IUUC-Ssl-108626	Sclerotinia sclerotiorum	37.08	1.00e-166	580.00
IUUC-Smo-109477	Selaginella moellendorffii	38.40	5.00e-169	588.00
IUUC-Sit-110000	Setaria italica	38.17	1.00e-160	560.00
IUUC-Sly-111595	Solanum lycopersicum	38.44	0.00e+00	627.00
IUUC-Stu-112516	Solanum tuberosum	38.54	7.00e-180	624.00
IUUC-Sar-113195	Sorex araneus	83.18	0.00e+00	1327.00
IUUC-Sbi-114465	Sorghum bicolor	37.03	5.00e-168	584.00
IUUC-Sre-115006	Sporisorium reilianum	35.36	1.00e-152	533.00
IUUC-Tgu-117282	Taeniopygia guttata	77.77	0.00e+00	1328.00
IUUC-Tru-118406	Takifugu rubripes	67.86	0.00e+00	1183.00
IUUC-Tsy-119170	Tarsius syrichta	91.01	0.00e+00	1631.00
IUUC-Tni-119721	Tetraodon nigroviridis	66.41	0.00e+00	1157.00
IUUC-Tca-121761	Theobroma cacao	39.13	0.00e+00	632.00
IUUC-Tre-121908	Trichoderma reesei	36.32	5.00e-165	574.00
IUUC-Tvi-122547	Trichoderma virens	37.47	2.00e-167	582.00
IUUC-Tae-125496	Triticum aestivum	38.17	7.00e-164	570.00
IUUC-Tur-126811	Triticum urartu	39.31	4.00e-163	568.00
IUUC-Tme-126987	Tuber melanosporum	38.57	8.00e-178	617.00
IUUC-Tbe-127315	Tupaia belangeri	94.40	0.00e+00	880.00
IUUC-Ttr-129165	Tursiops truncatus	85.47	0.00e+00	1445.00
IUUC-Uma-129651	Ustilago maydis	35.37	1.00e-152	533.00
IUUC-Vda-129973	Verticillium dahliae	37.87	4.00e-159	555.00
IUUC-Vpa-130163	Vicugna pacos	85.59	0.00e+00	743.00
IUUC-Vvi-131402	Vitis vinifera	37.02	6.00e-177	614.00
IUUC-Xtr-132296	Xenopus tropicalis	72.95	0.00e+00	1285.00
IUUC-Xma-133028	Xiphophorus maculatus	69.36	0.00e+00	1249.00
IUUC-Yli-134484	Yarrowia lipolytica	38.16	7.00e-156	544.00
IUUC-Zma-135938	Zea mays	34.41	4.00e-149	522.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence