iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114853

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000762

Gene Name

SORBI_003G427100

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g045910	Sb03g045910.1	Sb03g045910.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.60e-30	103.5	230	264
UBD/Beta-Prp	9.20e-57	193.3	150	346

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgv 34
           H +sv++l+f  +d  ++s+sdD t+kvWD+ ++ 
   Q: 230  HGESVRGLSFsrTDLKFCSCSDDRTVKVWDFARCQ 264
           99*********877889*************87665 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdk 108
           i+ v ++  ++ l+tgs++g  ++w+ ++ ++   l+ h+ +v+++ +s++++++vtg + ++ik w  + +   +  ++h +sv+ lsfs+++ k
   Q: 150  INRVLWTTTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDLPVRSMVWSHNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHGESVRGLSFSRTDLK 245
           667888999999*******************************************************9999999999999**************** PP
   S: 109  lvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtv 204
           + s s+drt++vwd    q+ +  l+gh   v +v +hp+++llvsG++D  v+lWd k+g+ l  + g h++ v+++++++ng+ ++++s+d+ +
   Q: 246  FCSCSDDRTVKVWDFARCQEEK-SLTGHGWDVKTVDWHPTKSLLVSGGKDYLVKLWDAKSGRELSSFHG-HKNIVHCVKWNQNGNWVLTASKDQII 339
           *********************9.********************************************99.************************** PP
   S: 205  klwdlqt 211
           kl+d+++
   Q: 340  KLYDIRS 346
           ****986 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MMQQQQQQLP PPPQHPPPQA GGGGGDFYRG PPMRQLSAAS STNLPPDYAA HPGPPPQQQH 60
QPPYDAYGDS FGAKRMRKPV QRRTVDYTSS IVRHVQARMW QRDARDRFTL QPTPAAVLDM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCGGCGGAG ATGATGCAGC AGCAGCAACA ACAGCTGCCA CCTCCGCCGC AGCACCCGCC 60
GCCCCAGGCT GGCGGCGGCG GTGGGGACTT CTACCGCGGC CCGCCGATGC GGCAGCTGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0006379--P:mRNA cleavage

KEGG

sbi:SORBI_03g045910

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001064	Aegilops tauschii	81.15	0.00e+00	776.00
IUUC-Aml-001363	Ailuropoda melanoleuca	53.68	2.00e-132	466.00
IUUC-Atr-003030	Amborella trichopoda	76.34	0.00e+00	712.00
IUUC-Apl-003409	Anas platyrhynchos	53.41	2.00e-130	459.00
IUUC-Aca-004694	Anolis carolinensis	53.43	2.00e-131	463.00
IUUC-Aly-006063	Arabidopsis lyrata	77.06	0.00e+00	712.00
IUUC-Ath-006583	Arabidopsis thaliana	71.34	0.00e+00	710.00
IUUC-Ago-007805	Ashbya gossypii	44.08	6.00e-83	300.00
IUUC-Acl-008075	Aspergillus clavatus	38.19	5.00e-89	321.00
IUUC-Afl-008582	Aspergillus flavus	39.38	1.00e-86	313.00
IUUC-Afu-008817	Aspergillus fumigatus	38.40	3.00e-77	281.00
IUUC-Ani-009391	Aspergillus nidulans	37.78	1.00e-79	289.00
IUUC-Ang-009750	Aspergillus niger	41.99	7.00e-73	266.00
IUUC-Aor-010085	Aspergillus oryzae	38.59	4.00e-89	321.00
IUUC-Ate-010397	Aspergillus terreus	39.16	1.00e-89	323.00
IUUC-Ame-010741	Astyanax mexicanus	54.47	2.00e-81	297.00
IUUC-Bgr-012169	Blumeria graminis	44.78	9.00e-97	346.00
IUUC-Bta-013265	Bos taurus	53.68	2.00e-132	466.00
IUUC-Bci-013762	Botrytis cinerea	43.17	4.00e-97	348.00
IUUC-Bdi-014849	Brachypodium distachyon	84.74	0.00e+00	839.00
IUUC-Bol-015325	Brassica oleracea	72.73	0.00e+00	709.00
IUUC-Bra-017064	Brassica rapa	73.58	0.00e+00	706.00
IUUC-Cel-018378	Caenorhabditis elegans	43.79	2.00e-111	396.00
IUUC-Cja-019547	Callithrix jacchus	53.68	1.00e-132	466.00
IUUC-Cfa-020031	Canis familiaris	53.68	2.00e-132	466.00
IUUC-Cpo-021554	Cavia porcellus	52.75	2.00e-127	449.00
IUUC-Cre-022830	Chlamydomonas reinhardtii	43.01	7.00e-76	277.00
IUUC-Csa-023146	Chlorocebus sabaeus	53.43	4.00e-132	465.00
IUUC-Cho-024679	Choloepus hoffmanni	51.43	1.00e-119	424.00
IUUC-Cin-025415	Ciona intestinalis	54.47	2.00e-123	436.00
IUUC-Csv-026003	Ciona savignyi	53.39	2.00e-119	421.00
IUUC-Cgl-026391	Colletotrichum gloeosporioides	42.70	4.00e-93	334.00
IUUC-Cne-026983	Cryptococcus neoformans	42.86	1.00e-89	323.00
IUUC-Cme-027147	Cyanidioschyzon merolae	50.26	8.00e-113	399.00
IUUC-Dre-028545	Danio rerio	54.17	2.00e-133	469.00
IUUC-Dno-029677	Dasypus novemcinctus	53.68	1.00e-132	467.00
IUUC-Dse-031371	Dothistroma septosporum	44.14	2.00e-92	332.00
IUUC-Dme-031663	Drosophila melanogaster	50.89	7.00e-135	473.00
IUUC-Ete-032511	Echinops telfairi	47.55	4.00e-111	395.00
IUUC-Eca-034152	Equus caballus	53.68	2.00e-132	466.00
IUUC-Eeu-034560	Erinaceus europaeus	43.00	3.00e-45	176.00
IUUC-Fca-035820	Felis catus	53.68	2.00e-132	466.00
IUUC-Fox-037958	Fusarium oxysporum	41.26	2.00e-93	335.00
IUUC-Fso-038162	Fusarium solani	43.41	3.00e-92	331.00
IUUC-Gmo-039708	Gadus morhua	53.17	2.00e-131	462.00
IUUC-Ggr-040031	Gaeumannomyces graminis	40.29	4.00e-85	307.00
IUUC-Gga-040963	Gallus gallus	53.68	4.00e-132	465.00
IUUC-Gac-041541	Gasterosteus aculeatus	55.15	1.00e-129	456.00
IUUC-Gma-043757	Glycine max	76.89	0.00e+00	767.00
IUUC-Ggo-045564	Gorilla gorilla	53.68	1.00e-132	467.00
IUUC-Hsa-045833	Homo sapiens	53.68	1.00e-132	466.00
IUUC-Hvu-047848	Hordeum vulgare	78.35	0.00e+00	642.00
IUUC-Itr-048083	Ictidomys tridecemlineatus	53.68	2.00e-132	466.00
IUUC-Kpa-049308	Komagataella pastoris	39.84	2.00e-84	305.00
IUUC-Lch-050525	Latimeria chalumnae	54.17	3.00e-133	469.00
IUUC-Lpe-051364	Leersia perrieri	82.42	0.00e+00	818.00
IUUC-Loc-052696	Lepisosteus oculatus	53.92	4.00e-134	472.00
IUUC-Lma-052951	Leptosphaeria maculans	44.57	4.00e-96	344.00
IUUC-Laf-053653	Loxodonta africana	53.68	4.00e-132	465.00
IUUC-Mcc-055797	Macaca mulatta	53.68	1.00e-132	467.00
IUUC-Meu-056331	Macropus eugenii	53.42	4.00e-101	362.00
IUUC-Mor-057168	Magnaporthe oryzae	40.25	1.00e-88	320.00
IUUC-Mpo-057510	Magnaporthe poae	43.26	3.00e-61	228.00
IUUC-Mtr-058032	Medicago truncatula	75.90	0.00e+00	723.00
IUUC-Mla-058852	Melampsora laricipopulina	49.33	3.00e-108	384.00
IUUC-Mga-059311	Meleagris gallopavo	53.68	4.00e-132	465.00
IUUC-Mvi-060544	Microbotryum violaceum	49.87	2.00e-110	392.00
IUUC-Mmr-061143	Microcebus murinus	53.68	2.00e-132	466.00
IUUC-Mdo-061977	Monodelphis domestica	53.68	4.00e-132	465.00
IUUC-Mmu-063922	Mus musculus	53.68	2.00e-132	466.00
IUUC-Mac-064961	Musa acuminata	80.17	0.00e+00	791.00
IUUC-Mpu-066079	Mustela putorius furo	56.00	4.00e-116	412.00
IUUC-Mlu-067247	Myotis lucifugus	53.68	2.00e-132	466.00
IUUC-Nfi-068255	Neosartorya fischeri	39.84	5.00e-85	307.00
IUUC-Ncr-068909	Neurospora crassa	42.82	1.00e-95	343.00
IUUC-Nle-068994	Nomascus leucogenys	53.68	2.00e-132	466.00
IUUC-Opr-071079	Ochotona princeps	53.68	5.00e-133	468.00
IUUC-Ont-071971	Oreochromis niloticus	53.19	3.00e-131	462.00
IUUC-Oan-073135	Ornithorhynchus anatinus	53.93	9.00e-118	417.00
IUUC-Ocu-073982	Oryctolagus cuniculus	53.68	4.00e-132	465.00
IUUC-Oba-075297	Oryza barthii	76.32	0.00e+00	848.00
IUUC-Obr-076641	Oryza brachyantha	83.04	0.00e+00	828.00
IUUC-Ogl-077539	Oryza glaberrima	76.71	0.00e+00	637.00
IUUC-Ogu-078807	Oryza glumaepatula	77.83	0.00e+00	856.00
IUUC-Oin-079229	Oryza indica	79.19	0.00e+00	901.00
IUUC-Olo-080371	Oryza longistaminata	75.89	0.00e+00	794.00
IUUC-Ome-081149	Oryza meridionalis	83.94	0.00e+00	825.00
IUUC-Oni-082970	Oryza nivara	76.47	0.00e+00	849.00
IUUC-Opu-083415	Oryza punctata	84.89	0.00e+00	818.00
IUUC-Oru-085236	Oryza rufipogon	85.30	0.00e+00	828.00
IUUC-Ola-087421	Oryzias latipes	54.17	2.00e-134	471.00
IUUC-Olu-087821	Ostreococcus lucimarinus	54.67	6.00e-122	429.00
IUUC-Oga-088132	Otolemur garnettii	53.68	2.00e-132	466.00
IUUC-Oar-089513	Ovis aries	53.68	2.00e-132	466.00
IUUC-Ptr-090717	Pan troglodytes	53.68	1.00e-132	466.00
IUUC-Pan-092108	Papio anubis	53.68	1.00e-132	467.00
IUUC-Psi-093892	Pelodiscus sinensis	53.68	7.00e-132	464.00
IUUC-Pma-094561	Petromyzon marinus	54.68	5.00e-133	468.00
IUUC-Pno-094943	Phaeosphaeria nodorum	43.07	2.00e-97	349.00
IUUC-Ppa-095359	Physcomitrella patens	71.93	0.00e+00	653.00
IUUC-Pfo-096516	Poecilia formosa	52.81	5.00e-130	457.00
IUUC-Pab-097759	Pongo abelii	53.68	2.00e-132	466.00
IUUC-Pop-099553	Populus trichocarpa	77.00	0.00e+00	784.00
IUUC-Ppe-101957	Prunus persica	76.53	0.00e+00	740.00
IUUC-Pva-102918	Pteropus vampyrus	53.68	6.00e-132	464.00
IUUC-Pgr-103594	Puccinia graminis	47.69	4.00e-110	391.00
IUUC-Ptt-103879	Puccinia triticina	48.22	4.00e-93	334.00
IUUC-Pte-104419	Pyrenophora teres	41.88	6.00e-98	350.00
IUUC-Pyt-104718	Pyrenophora triticirepentis	43.86	5.00e-96	344.00
IUUC-Rno-105838	Rattus norvegicus	53.68	2.00e-132	466.00
IUUC-Sce-106331	Saccharomyces cerevisiae	37.87	2.00e-78	285.00
IUUC-Sha-107435	Sarcophilus harrisii	53.41	1.00e-130	460.00
IUUC-Sja-107796	Schizosaccharomyces japonicus	41.83	4.00e-96	344.00
IUUC-Spo-108163	Schizosaccharomyces pombe	42.08	4.00e-98	350.00
IUUC-Smo-108972	Selaginella moellendorffii	70.62	0.00e+00	646.00
IUUC-Sit-109729	Setaria italica	91.53	0.00e+00	1033.00
IUUC-Sly-111679	Solanum lycopersicum	77.95	0.00e+00	746.00
IUUC-Sar-113157	Sorex araneus	53.68	3.00e-132	465.00
IUUC-Sre-115085	Sporisorium reilianum	41.70	2.00e-94	339.00
IUUC-Ssc-116286	Sus scrofa	53.55	4.00e-131	462.00
IUUC-Tgu-117219	Taeniopygia guttata	53.68	5.00e-132	464.00
IUUC-Tru-117550	Takifugu rubripes	55.58	8.00e-132	462.00
IUUC-Tsy-119294	Tarsius syrichta	53.68	1.00e-132	467.00
IUUC-Tni-120561	Tetraodon nigroviridis	55.58	4.00e-133	468.00
IUUC-Tca-121347	Theobroma cacao	80.09	0.00e+00	769.00
IUUC-Tre-122018	Trichoderma reesei	41.02	2.00e-96	345.00
IUUC-Tvi-122413	Trichoderma virens	41.28	5.00e-95	341.00
IUUC-Tae-123904	Triticum aestivum	83.73	0.00e+00	829.00
IUUC-Tme-127077	Tuber melanosporum	46.03	4.00e-101	361.00
IUUC-Tbe-127744	Tupaia belangeri	37.43	1.00e-66	248.00
IUUC-Ttr-128777	Tursiops truncatus	46.57	2.00e-103	370.00
IUUC-Uma-129568	Ustilago maydis	41.65	4.00e-91	328.00
IUUC-Vda-129834	Verticillium dahliae	39.12	2.00e-87	315.00
IUUC-Vpa-130563	Vicugna pacos	52.53	3.00e-29	122.00
IUUC-Vvi-131360	Vitis vinifera	78.45	0.00e+00	780.00
IUUC-Xtr-132630	Xenopus tropicalis	53.68	1.00e-133	471.00
IUUC-Xma-133665	Xiphophorus maculatus	53.43	7.00e-132	464.00
IUUC-Yli-134556	Yarrowia lipolytica	39.44	5.00e-80	290.00
IUUC-Zma-135787	Zea mays	96.52	0.00e+00	1144.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence