iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.20e-28	98.0	546	578

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlr 31
           H+d vtc++f   d ++++sGs D +i++W++ 
   Q: 546  HNDYVTCIQFspVDeNYFLSGSLDAKIRIWSIQ 578
           ***********9666***************975 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MMEDGNKLDR KKTMTMNWEG LGDFEDEDDD RFFETHDRLS SALTFDMANA SSSDEDEDFD 60
DCRLSFSSAV SSLTTASRKF RTPAMSPDYD IWMAAPGSIS ERRRRLLHGM GLASNKDMVS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GACCTTTGGT TTTGACTTAA GATCTTAATT AACATCATCA AACATTTTTA TTAGTTATGG 60
ACTTATGGTA ATGAAATTGA ACGTGAAGAG ATCGATGTGT CTTACAAAAA GACAAAACAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR003143--Cyt_cd1_C
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006220	Arabidopsis lyrata	96.27	0.00e+00	1565.00
IUUC-Bol-015370	Brassica oleracea	77.73	0.00e+00	1182.00
IUUC-Bra-017887	Brassica rapa	81.52	0.00e+00	1169.00
IUUC-Fox-037744	Fusarium oxysporum	44.20	3.00e-36	144.00
IUUC-Gma-042939	Glycine max	49.95	0.00e+00	778.00
IUUC-Mtr-057965	Medicago truncatula	50.83	0.00e+00	774.00
IUUC-Mac-065405	Musa acuminata	47.09	4.00e-151	528.00
IUUC-Pop-099373	Populus trichocarpa	57.56	0.00e+00	920.00
IUUC-Ppe-101329	Prunus persica	51.60	0.00e+00	813.00
IUUC-Sly-111902	Solanum lycopersicum	49.38	0.00e+00	746.00
IUUC-Stu-112158	Solanum tuberosum	51.34	0.00e+00	728.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence