iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-100012

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

EF145295

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0009s10310	POPTR_0009s10310.1	POPTR_0009s10310.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.10e-35	121.7	13	85

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           ++p +f+CpIslelM+dPv++++G+tydrssIe w+a+g++tcPvtr+plt+ +l+Pn+tlrrliq+wc +n+
   Q: 13   QIPYHFRCPISLELMCDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANR 85
           5899*****************************************************************9986 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MPGTLEPLDL TVQIPYHFRC PISLELMCDP VTVSTGQTYD RSSIESWVAT GNTTCPVTRA 60
PLTDFTLIPN HTLRRLIQDW CVANRAFGVE RIPTPKQPAE PSLVRSLLNQ AASASNPTHS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACGCTTCTCT GTTCCATTTC CGTTTCGTAT AAGAGAACCC AAGCCACAAT TCACAGCCTA 60
ACAAAGCTGT TACAGGATTT TCAGACCTCC TCATATTTCC CTTCTCTTCT TCTAAACAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000645	Aegilops tauschii	48.19	4.00e-83	301.00
IUUC-Atr-002952	Amborella trichopoda	58.82	1.00e-114	405.00
IUUC-Aly-005606	Arabidopsis lyrata	69.91	3.00e-154	537.00
IUUC-Ath-007142	Arabidopsis thaliana	69.43	5.00e-154	536.00
IUUC-Bdi-014994	Brachypodium distachyon	49.04	3.00e-72	265.00
IUUC-Bra-017765	Brassica rapa	68.63	6.00e-153	533.00
IUUC-Gma-044197	Glycine max	74.22	1.00e-174	605.00
IUUC-Hvu-047378	Hordeum vulgare	48.19	3.00e-84	304.00
IUUC-Lpe-050781	Leersia perrieri	67.08	8.00e-54	202.00
IUUC-Mtr-058307	Medicago truncatula	73.96	1.00e-164	572.00
IUUC-Mvi-060511	Microbotryum violaceum	39.22	9.00e-05	40.80
IUUC-Mac-064526	Musa acuminata	47.73	6.00e-65	240.00
IUUC-Oba-075168	Oryza barthii	67.59	3.00e-48	183.00
IUUC-Obr-076528	Oryza brachyantha	78.70	2.00e-47	182.00
IUUC-Ogl-077566	Oryza glaberrima	63.64	6.00e-54	204.00
IUUC-Ogu-078818	Oryza glumaepatula	63.64	1.00e-53	202.00
IUUC-Oin-079962	Oryza indica	63.64	2.00e-51	199.00
IUUC-Oni-082172	Oryza nivara	63.64	8.00e-54	203.00
IUUC-Opu-083930	Oryza punctata	62.42	5.00e-55	207.00
IUUC-Oru-084509	Oryza rufipogon	63.64	8.00e-54	203.00
IUUC-Osa-085902	Oryza sativa	63.64	8.00e-54	203.00
IUUC-Ppe-101571	Prunus persica	79.57	1.00e-170	592.00
IUUC-Sit-110186	Setaria italica	64.10	2.00e-51	195.00
IUUC-Sly-111810	Solanum lycopersicum	76.63	5.00e-174	603.00
IUUC-Stu-112274	Solanum tuberosum	78.55	6.00e-178	615.00
IUUC-Sbi-114366	Sorghum bicolor	63.41	4.00e-55	208.00
IUUC-Tca-121177	Theobroma cacao	81.25	0.00e+00	688.00
IUUC-Tae-122743	Triticum aestivum	48.32	4.00e-86	311.00
IUUC-Tur-126112	Triticum urartu	48.43	2.00e-84	305.00
IUUC-Vvi-131329	Vitis vinifera	77.11	3.00e-179	620.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence