iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099806

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_816933; POPTR_0002s25000g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s25000	POPTR_0002s25000.1	POPTR_0002s25000.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.30e-31	109.6	72	143

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +peef+Cp+s+elMrdPvvl++G+tydr  I+kwl+ g++tcP+t+q l+++ l+Pnl +r++i++wc++++
   Q: 72   CPEEFKCPLSKELMRDPVVLATGQTYDRPFIQKWLKAGNRTCPLTQQVLSHTILTPNLLIREMISQWCKSQG 143
           59******************************************************************9986 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MAKTGVFKSD PMVMTKAMEL KKELQKLVRN IVDDEDYRTE LIDQARETLF ALKGLKVKRR 60
SSSLKLRETV LCPEEFKCPL SKELMRDPVV LATGQTYDRP FIQKWLKAGN RTCPLTQQVL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGAAAAAGG AAAAGGATGG ACCGGTGGAG CGGAGAGAAG AAGCGGTTGG CTGCTCTCTC 60
ACTTAAAGCG TGTGAAAGTT TCTATAGATA GAAATTAGAG CAAGCCATAT TAGAGAAAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0002s25000g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006420	Arabidopsis lyrata	63.89	8.00e-166	576.00
IUUC-Ath-007457	Arabidopsis thaliana	63.68	3.00e-161	561.00
IUUC-Bol-015599	Brassica oleracea	63.20	5.00e-157	546.00
IUUC-Bra-017759	Brassica rapa	62.34	1.00e-152	532.00
IUUC-Gma-043804	Glycine max	71.80	0.00e+00	642.00
IUUC-Mtr-057877	Medicago truncatula	64.72	2.00e-171	594.00
IUUC-Mac-065616	Musa acuminata	53.75	8.00e-121	426.00
IUUC-Oba-075311	Oryza barthii	51.34	2.00e-104	371.00
IUUC-Obr-076232	Oryza brachyantha	51.34	1.00e-105	375.00
IUUC-Ogu-078448	Oryza glumaepatula	50.37	6.00e-110	390.00
IUUC-Oin-079693	Oryza indica	51.34	3.00e-104	371.00
IUUC-Oni-082158	Oryza nivara	50.37	6.00e-110	390.00
IUUC-Oru-084335	Oryza rufipogon	50.37	6.00e-110	390.00
IUUC-Ppe-101662	Prunus persica	76.97	0.00e+00	706.00
IUUC-Sly-110911	Solanum lycopersicum	71.93	0.00e+00	672.00
IUUC-Stu-112732	Solanum tuberosum	73.03	0.00e+00	669.00
IUUC-Tca-121080	Theobroma cacao	77.27	0.00e+00	737.00
IUUC-Tae-123657	Triticum aestivum	46.52	1.00e-85	310.00
IUUC-Vvi-131168	Vitis vinifera	74.34	0.00e+00	693.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence