iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006647

UUCD1 version

UUC-ArT-00082

Ensembl Protein ID

AT5G65500.2

UniProt Accession

Q9FGD7; F4KHZ7; PUB50_ARATH

Genbank Protein ID

BAB11278.1; BAB11278.1; AED98064.1

Protein Name

Putative U-box domain-containing protein 50; Plant U-box protein 50; RING-type E3 ubiquitin transferase PUB50

Genbank Nucleotide ID

AB026638; AB026639; CP002688

Gene Name

PUB50; At5g65500; K19O4.3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G65500	AT5G65500.2	AT5G65500.2
AT5G65500	AT5G65500.1	AT5G65500.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.10e-24	85.3	722	794

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           ++p+ f+CpI  e+M++P+v+++G +y+ ++I++wl+ g+ t+P+t+ +l+ ++l+Pn+tlr+liq+w+++++
   Q: 722  DIPSVFMCPILQEVMKNPHVAADGFSYELEAIQEWLSMGHDTSPMTNLRLDYQMLTPNHTLRSLIQDWHSKRA 794
           69*******************************************************************9875 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MEETKTHELE VEAESGSRME KVYIAVGNDV QEGYKTIHWA LKKWNNIPIS IVLLHLCNIS 60
QDFVYTPFGK LPASSVSEEK LQVLRKYEDQ KIDKLLSKYI TFCGKLQVKA ELLKVEKQHD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAAGTCAAT AATCTTGATC TCTCAAGTTA CAATGAAGAA CAAAACTTTT GTCTTTAAAA 60
GAGCCATTCA CCAGACAAAA CACTAAACGA TCATCAACAC AAGCCAGAAG AAGATGGAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0067--ATP-binding
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0547--Nucleotide-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011009--Kinase-like_dom
IPR000719--Prot_kinase_dom
IPR001245--Ser-Thr/Tyr_kinase_cat_dom
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50011--PROTEIN_KINASE_DOM
PS51698--U_BOX

Pfam

PF07714--Pkinase_Tyr
PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0005524--F:ATP binding
GO:0004672--F:protein kinase activity
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

ath:AT5G65500

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005429	Arabidopsis lyrata	88.46	0.00e+00	1341.00
IUUC-Bol-015489	Brassica oleracea	84.64	0.00e+00	1295.00
IUUC-Bra-017039	Brassica rapa	84.38	0.00e+00	1332.00
IUUC-Gma-044250	Glycine max	51.12	0.00e+00	754.00
IUUC-Meu-055962	Macropus eugenii	55.22	7.00e-17	81.30
IUUC-Mtr-058574	Medicago truncatula	48.41	0.00e+00	711.00
IUUC-Pop-099330	Populus trichocarpa	50.40	5.00e-166	577.00
IUUC-Ppe-101488	Prunus persica	52.03	0.00e+00	820.00
IUUC-Sly-111173	Solanum lycopersicum	43.96	6.00e-177	613.00
IUUC-Stu-112378	Solanum tuberosum	46.53	2.00e-133	468.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence