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Tag Content
iUUCD ID IUUC-Bra-016978
Ensembl Protein ID Bra033629.1-P
UniProt Accession M4EXU0; M4EXU0_BRARP
Protein Name Coatomer subunit alpha
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bra033629 Bra033629.1 Bra033629.1-P
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 9.50e-39 130.7 50 86
UBD/Beta-Prp 3.20e-78 263.9 3 322
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           H+++v++++f ++ +l+vsG+dD +ikvW+ +t+++l
   Q: 50   HEGPVRGVHFhNSqPLFVSGGDDYKIKVWNHKTHRCL 86
           9*********9777****************9999997 PP
   

   UBD/Beta-Prp
   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvls 99
           t +++++++++ ++f+p++++++++  +g i++wd+++g+l+ ++ +he++v+ v f+++++++v+g++D+ ikvw+ +t  c+ tl gh d++++
   Q: 3    TKFETKSNRVKGLTFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNHKTHRCLFTLLGHLDYIRT 98
           67889999**************************************************************************************** PP
   S: 100  lsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl..........................ktg 169
           ++f+ ++ ++vs+s+d+tir+w++++++c++ +l+gh++ v+c+++hp+++l+vs+slD+tvr+Wd+                            +
   Q: 99   VQFHHENPWIVSASDDQTIRIWNWQSRTCIS-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIgslkkktvspaddlmrftqmnsdlfgGVD 193
           *******************************.*************************************************988888888888777 PP
   S: 170  kllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec..vrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlh 263
            +++ + +gh++ v++ sf+++ + +vsg++d++vklw + +++   v+tl+gh +nv+sv f+ +++++vs s+D+sir+Wd ++++ ++t+ ++
   Q: 194  AIVKYFLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNETKAweVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRRE 289
           888888888********************************887778************************************************* PP
   S: 264  nssvisvavlsfgdnvlvlgsedskvniwklkkne 298
           +++++  av +++ n l++g + +   ++kl++++
   Q: 290  HDRFWILAV-HPEINLLAAGHD-NGMIVFKLERER 322
           *********.888777777755.566677887766 PP
   
Organism Brassica rapa
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
Protein Sequence
(Fasta)
MLTKFETKSN RVKGLTFHPK RPWILASLHS GVIQLWDYRM GTLIDRFDEH EGPVRGVHFH 60
NSQPLFVSGG DDYKIKVWNH KTHRCLFTLL GHLDYIRTVQ FHHENPWIVS ASDDQTIRIW 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Bra-016978|E3,WD_repeat;UBD,Beta-Prp|Brassica rapa
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGTTGACGA AGTTCGAGAC GAAGAGTAAC AGAGTTAAGG GCCTCACCTT CCACCCTAAG 60
CGACCATGGA TCCTCGCCAG TTTGCACAGT GGTGTGATCC AGCTCTGGGA TTATCGTATG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Bra-016978|E3,WD_repeat;UBD,Beta-Prp|Brassica rapa
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR024977--Apc4_WD40_dom
IPR016391--Coatomer_asu
IPR010714--Coatomer_asu_C
IPR006692--Coatomer_WD-assoc_reg
IPR020472--G-protein_beta_WD-40_rep
IPR011048--Haem_d1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF12894--ANAPC4_WD40
PF04053--Coatomer_WDAD
PF06957--COPI_C
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000064 Aegilops tauschii 75.92 0.00e+00 1952.00
IUUC-Aml-001758 Ailuropoda melanoleuca 53.49 0.00e+00 1339.00
IUUC-Atr-002493 Amborella trichopoda 78.85 0.00e+00 1975.00
IUUC-Apl-003385 Anas platyrhynchos 49.02 0.00e+00 1032.00
IUUC-Aly-006020 Arabidopsis lyrata 92.46 0.00e+00 2246.00
IUUC-Ath-007360 Arabidopsis thaliana 93.28 0.00e+00 2242.00
IUUC-Ago-007992 Ashbya gossypii 43.21 0.00e+00 960.00
IUUC-Acl-008027 Aspergillus clavatus 55.31 0.00e+00 970.00
IUUC-Afl-008644 Aspergillus flavus 55.29 0.00e+00 964.00
IUUC-Afu-008964 Aspergillus fumigatus 45.91 0.00e+00 1103.00
IUUC-Ani-009379 Aspergillus nidulans 54.77 0.00e+00 979.00
IUUC-Ang-009756 Aspergillus niger 55.31 0.00e+00 977.00
IUUC-Aor-010174 Aspergillus oryzae 55.29 0.00e+00 964.00
IUUC-Ate-010302 Aspergillus terreus 46.93 0.00e+00 1159.00
IUUC-Ame-011229 Astyanax mexicanus 52.51 0.00e+00 1305.00
IUUC-Bgr-012300 Blumeria graminis 46.54 0.00e+00 1079.00
IUUC-Bta-012524 Bos taurus 53.96 0.00e+00 1332.00
IUUC-Bci-013781 Botrytis cinerea 47.45 0.00e+00 1130.00
IUUC-Bdi-014549 Brachypodium distachyon 76.43 0.00e+00 1994.00
IUUC-Bol-015925 Brassica oleracea 96.56 0.00e+00 2300.00
IUUC-Cel-018115 Caenorhabditis elegans 54.28 0.00e+00 937.00
IUUC-Cja-019107 Callithrix jacchus 53.09 0.00e+00 1322.00
IUUC-Cfa-020675 Canis familiaris 53.14 0.00e+00 1312.00
IUUC-Cpo-021813 Cavia porcellus 54.22 0.00e+00 1349.00
IUUC-Cre-022969 Chlamydomonas reinhardtii 70.90 0.00e+00 1258.00
IUUC-Csa-023523 Chlorocebus sabaeus 54.00 0.00e+00 1350.00
IUUC-Cho-024704 Choloepus hoffmanni 41.56 4.00e-169 588.00
IUUC-Cin-025572 Ciona intestinalis 50.12 0.00e+00 1230.00
IUUC-Csv-025864 Ciona savignyi 57.50 0.00e+00 993.00
IUUC-Cgl-026510 Colletotrichum gloeosporioides 54.21 0.00e+00 973.00
IUUC-Dre-027421 Danio rerio 53.10 0.00e+00 1319.00
IUUC-Dno-029303 Dasypus novemcinctus 54.08 0.00e+00 1354.00
IUUC-Dse-031543 Dothistroma septosporum 46.27 0.00e+00 1077.00
IUUC-Dme-031945 Drosophila melanogaster 52.19 0.00e+00 1243.00
IUUC-Ete-032873 Echinops telfairi 59.03 0.00e+00 1034.00
IUUC-Eca-033773 Equus caballus 53.19 0.00e+00 1310.00
IUUC-Eeu-034874 Erinaceus europaeus 41.30 0.00e+00 647.00
IUUC-Fca-035739 Felis catus 52.97 0.00e+00 1304.00
IUUC-Fal-037263 Ficedula albicollis 50.32 0.00e+00 1186.00
IUUC-Fox-037738 Fusarium oxysporum 46.47 0.00e+00 1131.00
IUUC-Fso-038153 Fusarium solani 46.60 0.00e+00 1121.00
IUUC-Gmo-039602 Gadus morhua 50.12 0.00e+00 1218.00
IUUC-Ggr-039931 Gaeumannomyces graminis 53.92 0.00e+00 956.00
IUUC-Gga-040590 Gallus gallus 53.92 0.00e+00 1353.00
IUUC-Gac-041318 Gasterosteus aculeatus 53.33 0.00e+00 1332.00
IUUC-Gma-043894 Glycine max 82.31 0.00e+00 2086.00
IUUC-Ggo-045029 Gorilla gorilla 53.61 0.00e+00 1342.00
IUUC-Hsa-046078 Homo sapiens 53.61 0.00e+00 1341.00
IUUC-Hvu-047556 Hordeum vulgare 77.00 0.00e+00 2005.00
IUUC-Itr-048881 Ictidomys tridecemlineatus 45.25 0.00e+00 748.00
IUUC-Kpa-049256 Komagataella pastoris 45.55 0.00e+00 1052.00
IUUC-Lch-049706 Latimeria chalumnae 53.33 0.00e+00 1333.00
IUUC-Lpe-051316 Leersia perrieri 77.07 0.00e+00 1966.00
IUUC-Lma-053138 Leptosphaeria maculans 46.93 0.00e+00 1127.00
IUUC-Laf-053510 Loxodonta africana 54.93 0.00e+00 1368.00
IUUC-Mcc-055836 Macaca mulatta 53.85 0.00e+00 1337.00
IUUC-Mor-057172 Magnaporthe oryzae 45.66 0.00e+00 1098.00
IUUC-Mpo-057300 Magnaporthe poae 46.16 0.00e+00 1102.00
IUUC-Mtr-058248 Medicago truncatula 81.57 0.00e+00 2094.00
IUUC-Mla-059019 Melampsora laricipopulina 50.36 0.00e+00 1230.00
IUUC-Mga-059499 Meleagris gallopavo 53.83 0.00e+00 1349.00
IUUC-Mvi-060336 Microbotryum violaceum 51.17 0.00e+00 1219.00
IUUC-Mmr-061102 Microcebus murinus 53.33 0.00e+00 1323.00
IUUC-Mdo-062594 Monodelphis domestica 54.64 0.00e+00 1366.00
IUUC-Mmu-063736 Mus musculus 53.75 0.00e+00 1338.00
IUUC-Mac-065398 Musa acuminata 70.82 0.00e+00 1811.00
IUUC-Mpu-066701 Mustela putorius furo 53.88 0.00e+00 1347.00
IUUC-Mlu-067392 Myotis lucifugus 54.52 0.00e+00 1339.00
IUUC-Nfi-068270 Neosartorya fischeri 55.42 0.00e+00 973.00
IUUC-Ncr-068892 Neurospora crassa 47.61 0.00e+00 1124.00
IUUC-Opr-070952 Ochotona princeps 41.47 0.00e+00 652.00
IUUC-Ont-072488 Oreochromis niloticus 53.32 0.00e+00 1317.00
IUUC-Ocu-074211 Oryctolagus cuniculus 54.04 0.00e+00 1347.00
IUUC-Oba-075761 Oryza barthii 77.21 0.00e+00 1981.00
IUUC-Obr-076429 Oryza brachyantha 77.13 0.00e+00 1990.00
IUUC-Ogl-077364 Oryza glaberrima 77.40 0.00e+00 1987.00
IUUC-Ogu-078257 Oryza glumaepatula 77.61 0.00e+00 1934.00
IUUC-Oin-079274 Oryza indica 77.31 0.00e+00 1985.00
IUUC-Olo-080466 Oryza longistaminata 83.72 0.00e+00 1495.00
IUUC-Ome-081993 Oryza meridionalis 82.89 0.00e+00 1372.00
IUUC-Oni-082874 Oryza nivara 77.31 0.00e+00 1984.00
IUUC-Opu-083885 Oryza punctata 77.23 0.00e+00 1983.00
IUUC-Oru-084274 Oryza rufipogon 77.31 0.00e+00 1985.00
IUUC-Osa-085565 Oryza sativa 77.31 0.00e+00 1985.00
IUUC-Ola-086921 Oryzias latipes 52.10 0.00e+00 1300.00
IUUC-Olu-087639 Ostreococcus lucimarinus 62.12 0.00e+00 1553.00
IUUC-Oga-087991 Otolemur garnettii 50.85 0.00e+00 1249.00
IUUC-Oar-089590 Ovis aries 53.80 0.00e+00 1346.00
IUUC-Ptr-090808 Pan troglodytes 53.69 0.00e+00 1343.00
IUUC-Pan-092475 Papio anubis 53.88 0.00e+00 1342.00
IUUC-Pno-094839 Phaeosphaeria nodorum 45.64 0.00e+00 1049.00
IUUC-Ppa-095785 Physcomitrella patens 69.93 0.00e+00 1797.00
IUUC-Pfo-097493 Poecilia formosa 53.32 0.00e+00 1311.00
IUUC-Pab-098497 Pongo abelii 54.00 0.00e+00 1352.00
IUUC-Pop-099992 Populus trichocarpa 84.28 0.00e+00 2080.00
IUUC-Pca-100413 Procavia capensis 59.53 0.00e+00 685.00
IUUC-Ppe-101899 Prunus persica 82.88 0.00e+00 2097.00
IUUC-Pva-102126 Pteropus vampyrus 51.64 0.00e+00 1272.00
IUUC-Pgr-103376 Puccinia graminis 50.61 0.00e+00 1227.00
IUUC-Ptt-103978 Puccinia triticina 51.79 0.00e+00 832.00
IUUC-Pte-104126 Pyrenophora teres 46.13 0.00e+00 1066.00
IUUC-Pyt-104778 Pyrenophora triticirepentis 39.11 0.00e+00 728.00
IUUC-Rno-105428 Rattus norvegicus 53.98 0.00e+00 1343.00
IUUC-Sce-106464 Saccharomyces cerevisiae 43.03 0.00e+00 946.00
IUUC-Sha-107301 Sarcophilus harrisii 53.63 0.00e+00 1331.00
IUUC-Sja-107961 Schizosaccharomyces japonicus 44.61 0.00e+00 1057.00
IUUC-Spo-108217 Schizosaccharomyces pombe 43.97 0.00e+00 1045.00
IUUC-Ssl-108643 Sclerotinia sclerotiorum 47.36 0.00e+00 1130.00
IUUC-Smo-109582 Selaginella moellendorffii 75.21 0.00e+00 1384.00
IUUC-Sit-109697 Setaria italica 76.89 0.00e+00 1978.00
IUUC-Sly-111759 Solanum lycopersicum 81.74 0.00e+00 2102.00
IUUC-Stu-112564 Solanum tuberosum 81.49 0.00e+00 2097.00
IUUC-Sar-113313 Sorex araneus 44.32 2.00e-173 602.00
IUUC-Sbi-114388 Sorghum bicolor 76.67 0.00e+00 1977.00
IUUC-Sre-115209 Sporisorium reilianum 55.23 0.00e+00 1007.00
IUUC-Ssc-115933 Sus scrofa 53.96 0.00e+00 1348.00
IUUC-Tgu-117109 Taeniopygia guttata 43.38 8.00e-108 383.00
IUUC-Tru-117772 Takifugu rubripes 52.29 0.00e+00 1284.00
IUUC-Tsy-119105 Tarsius syrichta 51.73 0.00e+00 1034.00
IUUC-Tca-120918 Theobroma cacao 88.24 0.00e+00 1578.00
IUUC-Tre-121951 Trichoderma reesei 53.58 0.00e+00 965.00
IUUC-Tvi-122359 Trichoderma virens 46.84 0.00e+00 1132.00
IUUC-Tae-125527 Triticum aestivum 76.72 0.00e+00 1963.00
IUUC-Tur-126754 Triticum urartu 75.41 0.00e+00 1919.00
IUUC-Tme-127170 Tuber melanosporum 48.66 0.00e+00 1186.00
IUUC-Ttr-128217 Tursiops truncatus 51.80 0.00e+00 1276.00
IUUC-Uma-129337 Ustilago maydis 54.32 0.00e+00 1006.00
IUUC-Vda-129828 Verticillium dahliae 46.43 0.00e+00 1103.00
IUUC-Vpa-130537 Vicugna pacos 53.33 0.00e+00 1317.00
IUUC-Vvi-130958 Vitis vinifera 81.41 0.00e+00 2089.00
IUUC-Xtr-132857 Xenopus tropicalis 52.43 0.00e+00 1263.00
IUUC-Xma-133138 Xiphophorus maculatus 53.32 0.00e+00 1313.00
IUUC-Yli-134399 Yarrowia lipolytica 49.01 0.00e+00 836.00
IUUC-Zma-135612 Zea mays 75.51 0.00e+00 1978.00
Created Date 25-Jun-2017

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