iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
PINA	HINT
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	24255109

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	0.0001	23.6	125	165

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlC 45
           C iCle  +d p+++ CgH+f+  C++++p+ +   +    CP+C
   Q: 125  CNICLEKAED-PILTCCGHLFCWGCFYQLPLIY--LNI-KECPVC 165
           99********.999************7763333..333.35**** PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSTSVQGETM DLDLNQEPSS DSESPGGLMT ALSPMLEELE SAQERIQERI RQLEVIVSRI 60
REREITTTTT PALVSPNEHR DSTAGVIHER SRERLVENGE NKTYLIAKAL NMEKTSSVPG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAACCTTAA ACATTTGGAA GACAATCATG TCCTAAGCCA GAGATTAAAA AAAGTTTTTG 60
GTTTAAATAT CCAAAGACCT ACTTCTTCTA TCGGTGTCTC TCTCTCTCTC TCTCGCCACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001370--BIR_rpt
IPR001841--Znf_RING

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

ath:AT2G44410

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006481	Arabidopsis lyrata	91.58	5.00e-172	596.00
IUUC-Bra-017862	Brassica rapa	61.13	9.00e-107	379.00
IUUC-Gma-044267	Glycine max	43.04	2.00e-34	139.00
IUUC-Mtr-058658	Medicago truncatula	44.05	6.00e-48	184.00
IUUC-Pop-099746	Populus trichocarpa	44.14	6.00e-50	191.00
IUUC-Ppe-101798	Prunus persica	45.49	3.00e-41	162.00
IUUC-Sly-111287	Solanum lycopersicum	47.95	4.00e-35	141.00
IUUC-Stu-112210	Solanum tuberosum	42.48	2.00e-44	172.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence