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Tag Content
iUUCD ID IUUC-Pop-099438
Ensembl Protein ID POPTR_0018s12810.1
UniProt Accession B9IMW3; B9IMW3_POPTR
Genbank Protein ID EEF03206.2
Protein Name WD-40 repeat family protein
Genbank Nucleotide ID CM000354
Gene Name POPTRDRAFT_736537; POPTR_0018s12810g
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
POPTR_0018s12810 POPTR_0018s12810.1 POPTR_0018s12810.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.40e-23 82.3 453 484
UBD/Beta-Prp 9.80e-41 141.0 345 628
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWD 29
    H++ v++laf ++ l +v+++dD ti+vWD
   Q: 453 HNGNVNDLAFayPNkQLvVVTCGDDRTIRVWD 484
    9***********775443699*********** PP
   


   UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksl.latgsrdgtikvwdvttgkl..................lrsl.sgheaevtavkfspdgkilvtgseDrtikv 78
    ++ s +++++f+p +++ l++g g + vw++ + +sl + +a v+ v +spdg ++ + + ++ +v
   Q: 345 NQGSAVKSMDFHPVQQIlLLVGTNMGEVMVWELGSRERiagrnfkvwdlnarsralQASLsNDYTASVNRVAWSPDGTLFGVAYSKHIMHV 435
    5677889999988877515788888999999999888789999999999999999888996677889**********999999999***** PP
   S: 79 wdlstgkcvhtlk...ghedsvlslsfsp.sg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg..nllvsGslDrtvr 162
    +++ g+ ++ +h+ +v +l+f ++ ++v+ ++drtirvwd g+ l + ghd+ v +v+ h ++ + ++s ++D++++
   Q: 436 YSYHGGDDIRNHLemdAHNGNVNDLAFAYpNKqLVVVTCGDDRTIRVWDAIVGTRLF-NFVGHDAPVYSVCPHHKEniQFIFSTATDGKIK 525
    ****888776533355**********9876664788999*****************9.*************9987757889********** PP
   S: 163 lWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgt....vklwdlqtgecvrtlng.htdnvksvrfspnderlvsgssDgsiri 248
    W ++ + +s + ++++ +g++l s+++++ + w+ ++g + rt+ng ++ +v+f+ ++r++ +++D i++
   Q: 526 AWLYDNAGSRVDYNA-PGHSSTTMAYSADGTRLFSCGTNKEgeshLVEWNESEGAVKRTYNGlAKRSGGVVKFDTTKNRFLAAGDDFMIKF 615
    **9977777777766.899999***************997533337789999**********8889999********************** PP
   S: 249 Wdlrsgdllktlq 261
    Wd+++++ll+t+
   Q: 616 WDMDNNNLLTTID 628
    *******999875 PP
   

Organism Populus trichocarpa
Protein Sequence
(Fasta)
MSSLSRELVF LILQFLEEEK FKETVHRLEQ ESGFYFNMRY FEEMVTNGEW DEVEKYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKRDR AKAVEILVKD LKVFAAFNEE LFKEITQLLT 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Pop-099438|E3,WD_repeat;UBD,Beta-Prp|Populus trichocarpa
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TCTATAAATA CTAGTAGAGT TCATAGAGAG AGAAGCCACA AAATTCAACT TCAACTACAG 60
AGAGAAAATC CAAGAAAGCT CTGAAACGAC ATCGTCCGTT TTCTCTCTCA AGAGAAAGAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Pop-099438|E3,WD_repeat;UBD,Beta-Prp|Populus trichocarpa
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

KEGG pop:POPTR_0018s12810g
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Gma-043971 Glycine max 84.22 0.00e+00 1896.00
IUUC-Mtr-058586 Medicago truncatula 83.44 0.00e+00 1886.00
Created Date 25-Jun-2017

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