iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-044375

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM000846

Gene Name

GLYMA_13G184300

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA13G25350	GLYMA13G25350.2	GLYMA13G25350.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.40e-35	118.7	140	178
UBD/Beta-Prp	9.10e-64	217.1	103	248

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+ +++ ++f +d + +vsG+ D+++kvWDl+ g+ll+
   Q: 140  GHSQGISTIKFsPDgRWVVSGGFDNVVKVWDLTGGKLLH 178
           8***********99999****************999876 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsg 106
           +t+v f+p+++++a+gs d  + +wd++++ ++++++gh+++++++kfspdg + v+g+ D+++kvwdl  gk +h +k he  ++sl+f+p  
   Q: 103  CTAVEFHPFGEFFASGSLDTNLNIWDIRKKGCIQTYKGHSQGISTIKFSPDGRWVVSGGFDNVVKVWDLTGGKLLHDFKFHEGHIRSLDFHPLE 196
           6888899999999999999999999999999999999999999999999999999999999999999999999999999999999999999988 PP
   S: 107  dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDr 159
             +++Gs+drt++ wdlet + +    + + + v+++++hpdg++l++G+ D+
   Q: 197  FLMATGSADRTVKFWDLETFELIG-STRHEVSGVRSIAFHPDGQILFAGFEDS 248
           888999999999999999999888.7777777888999999999999998885 PP

Organism

Glycine max

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MAKTGYKLQE FAAHSGNVNC LKLGRKANRL FITGGDDHSV NLWMIGKPTS LMSLCGHTSS 60
VESVTFDSAE VLILSGASSG VIKLWDLEEA KMVRTLTGHR LNCTAVEFHP FGEFFASGSL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTAAGAGCA GTTCAGTTTC CACTTCCAAA ACTGAAACAC AAATTCTCAG TTTGGTTCTG 60
AAGTGAAGAA GCTGACCCAA TTCCTCATTT GCTTCATTTG TGTGGAAAGG AACTTCATTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR003143--Cyt_cd1_C
IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence