iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099890

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000341

Gene Name

POPTRDRAFT_651234; POPTR_0005s17460g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s17460	POPTR_0005s17460.1	POPTR_0005s17460.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	8.20e-07	30.6	124	166

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl +f+d   +++ p C Hvfh dC+ +w         + +CP+Cr
   Q: 124  CAVCLIEFEDDqtLRLIPkCSHVFHPDCIDAW------LTSHVTCPVCR 166
           ****999955434788889*************......**********8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MVLLLLYTSQ FSIAQPARNS SMPPPPTPDN QNSTPQPKVN PLMAILMVVL VSVFFLLGFF 60
SVYVRQCADR RFRGTRFDPA AFAGAGRGSW RGNHGLEQEV IDTFPTFLYS TVKGLKIGEG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTCTTGC TCCTTCTCTA TACTTCGCAG TTTTCTATTG CACAGCCTGC ACGTAATTCT 60
TCAATGCCTC CACCACCAAC ACCCGATAAC CAGAATTCCA CGCCGCAACC GAAAGTCAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0732--Signal
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0005s17460g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006388	Arabidopsis lyrata	44.85	1.00e-54	206.00
IUUC-Ath-007432	Arabidopsis thaliana	44.77	3.00e-63	234.00
IUUC-Bol-015643	Brassica oleracea	46.41	7.00e-64	237.00
IUUC-Bra-016772	Brassica rapa	45.25	2.00e-59	221.00
IUUC-Gma-043731	Glycine max	51.15	1.00e-59	223.00
IUUC-Mtr-057905	Medicago truncatula	47.87	3.00e-63	234.00
IUUC-Tca-121082	Theobroma cacao	54.34	3.00e-74	271.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence