iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006585

Ensembl Protein ID

AT3G45620.2

UniProt Accession

F4J6P6; F4J6P6_ARATH

Genbank Protein ID

AEE78052.1

Protein Name

Transducin/WD40 repeat-like superfamily protein

Genbank Nucleotide ID

CP002686

Gene Name

At3g45620

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G45620	AT3G45620.1	AT3G45620.1
AT3G45620	AT3G45620.2	AT3G45620.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
HINT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.50e-22	78.9	87	121

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           gH++ v++++f s+ + lvsGsdD +i++W++ +g
   Q: 87   GHEGCVNAVEFnSTgDVLVSGSDDRQIMLWNWLSG 121
           8**********97779***************8665 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MARPRRRNTE IGDGFTEIFN REIGFSHPIT ISRRISASEF RIMDLSVPKT KCYGLSVFCR 60
MLRKSEPIQR LISGRVKKLD LYGKLNGHEG CVNAVEFNST GDVLVSGSDD RQIMLWNWLS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAACAGCAA AAGCGTAAAG ACTTGAACTT AAAACCATGG CGAGACCGAG ACGAAGAAAC 60
ACAGAGATCG GTGATGGCTT CACAGAGATA TTCAACAGAG AGATTGGTTT CTCTCATCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

KEGG

ath:AT3G45620

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000985	Aegilops tauschii	49.34	8.00e-131	459.00
IUUC-Atr-002578	Amborella trichopoda	53.83	2.00e-157	547.00
IUUC-Apl-003181	Anas platyrhynchos	34.09	6.00e-37	148.00
IUUC-Aly-005818	Arabidopsis lyrata	90.68	0.00e+00	954.00
IUUC-Bol-016291	Brassica oleracea	82.31	0.00e+00	858.00
IUUC-Bra-017588	Brassica rapa	81.35	0.00e+00	843.00
IUUC-Cre-022883	Chlamydomonas reinhardtii	31.86	1.00e-31	131.00
IUUC-Gma-044124	Glycine max	59.25	1.00e-170	592.00
IUUC-Hvu-047687	Hordeum vulgare	51.45	1.00e-136	479.00
IUUC-Lpe-051191	Leersia perrieri	52.48	1.00e-136	479.00
IUUC-Mtr-057813	Medicago truncatula	56.75	3.00e-164	570.00
IUUC-Mac-064558	Musa acuminata	50.58	5.00e-147	513.00
IUUC-Oba-075746	Oryza barthii	50.81	3.00e-137	481.00
IUUC-Obr-076629	Oryza brachyantha	49.51	8.00e-141	493.00
IUUC-Ogl-077243	Oryza glaberrima	51.39	2.00e-140	491.00
IUUC-Ogu-078029	Oryza glumaepatula	51.14	3.00e-139	487.00
IUUC-Olo-080308	Oryza longistaminata	54.76	2.00e-133	468.00
IUUC-Ome-081126	Oryza meridionalis	56.86	1.00e-135	475.00
IUUC-Oni-083114	Oryza nivara	51.97	2.00e-140	491.00
IUUC-Opu-083288	Oryza punctata	53.35	1.00e-136	478.00
IUUC-Oru-084724	Oryza rufipogon	51.97	5.00e-140	490.00
IUUC-Osa-085895	Oryza sativa	51.39	2.00e-140	491.00
IUUC-Olu-087847	Ostreococcus lucimarinus	31.30	2.00e-40	158.00
IUUC-Ppa-095764	Physcomitrella patens	47.02	4.00e-117	414.00
IUUC-Pgr-103528	Puccinia graminis	21.73	2.00e-12	66.60
IUUC-Smo-108963	Selaginella moellendorffii	48.67	1.00e-119	422.00
IUUC-Sit-110823	Setaria italica	51.48	4.00e-146	510.00
IUUC-Sly-111605	Solanum lycopersicum	60.81	2.00e-164	571.00
IUUC-Stu-111978	Solanum tuberosum	58.85	1.00e-170	591.00
IUUC-Sbi-114455	Sorghum bicolor	52.55	3.00e-146	511.00
IUUC-Tae-125798	Triticum aestivum	51.00	3.00e-135	474.00
IUUC-Tur-126381	Triticum urartu	47.17	8.00e-118	416.00
IUUC-Vpa-130145	Vicugna pacos	34.17	8.00e-37	148.00
IUUC-Vvi-131034	Vitis vinifera	57.62	1.00e-172	598.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence