iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tur-126095

Ensembl Protein ID

TRIUR3_29037-P1

UniProt Accession

M7ZSB8; M7ZSB8_TRIUA

Genbank Protein ID

EMS50999.1

Protein Name

Zinc finger CCCH domain-containing protein 17

Genbank Nucleotide ID

KD225475

Gene Name

TRIUR3_29037

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TRIUR3_29037	TRIUR3_29037-T1	TRIUR3_29037-P1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.70e-16	58.0	146	182

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrtgvl 35
           gH+  vt++a+   s + l sGs Dgt+++WD  tg +
   Q: 146  GHEKVVTGIALpagS-DKLYSGSKDGTVRLWDCQTGQC 182
           8**********9754.899***************9988 PP

Organism

Triticum urartu

Protein Sequence
(Fasta)

MDFEADGRFG NKRVHNRLGP APGAASSSSS TKVCIHWRAG RCNRFPCPFL HSELPEAATT 60
KRPNQRDGPG GHVWRNPNSG GGGRGGGGFN KWGRGPGGAD GGVRHKVPDR PCKFFLAGDC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACTTCG AGGCCGACGG CCGCTTCGGC AACAAGCGCG TGCACAACCG CCTCGGGCCC 60
GCGCCCGGCG CCGCCTCTTC GTCTTCCTCT ACCAAGGTCT GCATCCATTG GCGCGCTGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0853--WD repeat
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR000571--Znf_CCCH

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS50103--ZF_C3H1

Pfam

PF00400--WD40

SMART

SM00320--WD40
SM00356--ZnF_C3H1

Gene Ontology

GO:0046872--F:metal ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002831	Amborella trichopoda	50.33	5.00e-78	283.00
IUUC-Aly-005699	Arabidopsis lyrata	54.69	2.00e-88	318.00
IUUC-Ath-007001	Arabidopsis thaliana	54.57	5.00e-88	317.00
IUUC-Bdi-014857	Brachypodium distachyon	87.16	1.00e-141	495.00
IUUC-Bol-015897	Brassica oleracea	54.90	8.00e-86	309.00
IUUC-Bra-017351	Brassica rapa	53.49	6.00e-86	310.00
IUUC-Gma-042894	Glycine max	52.29	5.00e-86	310.00
IUUC-Hvu-047824	Hordeum vulgare	94.59	3.00e-152	530.00
IUUC-Lpe-051596	Leersia perrieri	87.12	4.00e-126	443.00
IUUC-Mtr-058068	Medicago truncatula	61.50	3.00e-71	261.00
IUUC-Mac-065071	Musa acuminata	61.90	3.00e-100	357.00
IUUC-Oba-075769	Oryza barthii	81.94	4.00e-133	466.00
IUUC-Obr-076011	Oryza brachyantha	83.11	5.00e-134	469.00
IUUC-Ogu-078248	Oryza glumaepatula	84.95	9.00e-135	472.00
IUUC-Oin-079981	Oryza indica	81.61	7.00e-132	462.00
IUUC-Olo-080571	Oryza longistaminata	81.94	2.00e-131	461.00
IUUC-Ome-081598	Oryza meridionalis	81.27	2.00e-131	461.00
IUUC-Oni-082711	Oryza nivara	81.61	6.00e-132	462.00
IUUC-Opu-083451	Oryza punctata	78.91	1.00e-131	461.00
IUUC-Oru-085129	Oryza rufipogon	81.61	2.00e-132	464.00
IUUC-Osa-085619	Oryza sativa	81.27	1.00e-130	458.00
IUUC-Ppa-096012	Physcomitrella patens	53.12	1.00e-57	216.00
IUUC-Pop-099994	Populus trichocarpa	53.68	2.00e-82	298.00
IUUC-Ppe-101609	Prunus persica	57.48	4.00e-91	327.00
IUUC-Smo-108900	Selaginella moellendorffii	43.54	1.00e-50	192.00
IUUC-Sit-109731	Setaria italica	77.36	7.00e-118	416.00
IUUC-Sly-111514	Solanum lycopersicum	52.82	1.00e-77	282.00
IUUC-Stu-112646	Solanum tuberosum	52.32	1.00e-81	295.00
IUUC-Sbi-114748	Sorghum bicolor	80.07	2.00e-128	451.00
IUUC-Tca-121658	Theobroma cacao	54.88	1.00e-85	309.00
IUUC-Tae-125577	Triticum aestivum	100.00	7.00e-155	539.00
IUUC-Vvi-131444	Vitis vinifera	53.49	2.00e-88	318.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence