iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099109

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ubiquitin carboxyl-terminal hydrolase

Genbank Nucleotide ID

CM000353

Gene Name

POPTRDRAFT_736198; POPTR_0017s11160g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0017s11160	POPTR_0017s11160.1	POPTR_0017s11160.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/UCH	4.20e-76	257.6	2	325

Active Site

Position(s)	Description	Evidence
82	Nucleophile	{ECO:0000256\|PIRSR:PIRSR038120-1}
157	Proton donor	{ECO:0000256\|PIRSR:PIRSR038120-1}

Domain Profile

DUB/UCH

   S: 7    ewleLesdPglftllvedfgvkrdiqveelysLdpenlglyqepvegllllFkinekressrksqvtsndlevvdediiktiffakqvigN 97
           +w+++esdPg+ft+l+++  vk++ qveelysLd ++l+++ +pv+gl++lFk+ ++++ +r          vv  d   ++ffa qvi+N
   Q: 2    SWCTIESDPGVFTELIQQMQVKGV-QVEELYSLDLDSLDSL-RPVYGLIFLFKWRPEEKDER----------VVITDPNPNLFFARQVINN 80
           7***********************.****************.***************99999..........55668889*********** PP
   S: 98   sCatyAllsvllncedklldlGttlsrlkestkaespenkalalgnqqvlecihnslariesrseperqdedneqytkeafhfvsyvning 188
           +Ca +A+ls l nc d   d+G++ls+lke+tk + pe k+la++n ++++++hns+ar+e++  +e++++     +++++hf+sy +++g
   Q: 81   ACASQAILSILMNCPDI--DIGPELSKLKEFTKNFPPELKGLAINNCEAIRVAHNSFARPEPFIPEEQKAAS---QEDDVYHFISYLPVDG 166
           ****************9..********************************************988777544...59************** PP
   S: 189  rlyeldglkpfPldlgkkketeelkdklkvvr.aflerikllesdeirfnllaivadrrviktlrlnvlkid................... 259
            lyeldglk+ P+ lg+++      d l+ v+    eri+  ++ eirfnllai ++r+ ++t+ l+ l+                     
   Q: 167  VLYELDGLKEGPISLGQCTGGHGDLDWLRMVQpVIQERIERHSNSEIRFNLLAIIKNRKEMYTAELKDLQKKrerilqqlaafqaerlvdn 257
           ******************76555445555554444******************************987766679***************** PP
   S: 260  ...keLlkLlkdieseeekieaqlddekekrkkfkiddirRtenydeficifikdlaregilrklvee 324
              + L k l++++  +e   +++  e++k kk+  ++irR++ny  f++ f+k la++++l+ l e+
   Q: 258  snnEALNKSLSEVNGGIESATEKILMEEDKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEK 325
           **766999********************************************************9997 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDLDSLDS LRPVYGLIFL FKWRPEEKDE 60
RVVITDPNPN LFFARQVINN ACASQAILSI LMNCPDIDIG PELSKLKEFT KNFPPELKGL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TAGAGTGAAA CTGAAAGAGC AGGAAGCATC TGTGTCACTG CGATCTCCAC TGGTAACCCT 60
AAAACTCTAT TACTTGCTAA AATATCGAGA GCTAATTTCT TCTTCATCAT CTCTTCCTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0645--Protease
KW-1185--Reference proteome
KW-0788--Thiol protease
KW-0833--Ubl conjugation pathway

Interpro

IPR001578--Peptidase_C12_UCH
IPR017390--Ubiquitinyl_hydrolase_UCH37

Pfam

PF01088--Peptidase_C12

PRINTS

PR00707--UBCTHYDRLASE

Gene Ontology

GO:0005737--C:cytoplasm
GO:0004843--F:thiol-dependent ubiquitin-specific protease activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0017s11160g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000936	Aegilops tauschii	73.00	1.00e-137	481.00
IUUC-Aml-001866	Ailuropoda melanoleuca	47.85	2.00e-81	295.00
IUUC-Atr-002966	Amborella trichopoda	77.54	7.00e-144	503.00
IUUC-Aca-004763	Anolis carolinensis	47.55	2.00e-80	291.00
IUUC-Aly-005581	Arabidopsis lyrata	74.17	2.00e-135	474.00
IUUC-Ath-007283	Arabidopsis thaliana	73.57	2.00e-138	484.00
IUUC-Ago-007999	Ashbya gossypii	36.02	3.00e-31	128.00
IUUC-Acl-008231	Aspergillus clavatus	50.21	4.00e-57	214.00
IUUC-Afu-008988	Aspergillus fumigatus	50.21	5.00e-56	210.00
IUUC-Ani-009420	Aspergillus nidulans	40.23	9.00e-56	209.00
IUUC-Ang-009859	Aspergillus niger	49.38	3.00e-53	201.00
IUUC-Ate-010347	Aspergillus terreus	45.70	4.00e-53	201.00
IUUC-Bdi-014132	Brachypodium distachyon	74.47	1.00e-132	465.00
IUUC-Bol-015611	Brassica oleracea	73.27	4.00e-138	483.00
IUUC-Bra-017769	Brassica rapa	73.27	2.00e-137	481.00
IUUC-Cel-018604	Caenorhabditis elegans	40.79	1.00e-65	242.00
IUUC-Cfa-020207	Canis familiaris	47.85	2.00e-81	295.00
IUUC-Cpo-021925	Cavia porcellus	45.71	2.00e-75	275.00
IUUC-Cre-022919	Chlamydomonas reinhardtii	48.77	1.00e-79	289.00
IUUC-Cho-024928	Choloepus hoffmanni	54.05	2.00e-18	86.30
IUUC-Cne-026955	Cryptococcus neoformans	32.09	8.00e-41	160.00
IUUC-Dno-028921	Dasypus novemcinctus	48.47	9.00e-82	296.00
IUUC-Dor-030891	Dipodomys ordii	41.71	2.00e-36	147.00
IUUC-Dme-031677	Drosophila melanogaster	45.92	1.00e-75	275.00
IUUC-Ete-032646	Echinops telfairi	44.34	1.00e-44	174.00
IUUC-Eeu-035305	Erinaceus europaeus	42.86	8.00e-36	143.00
IUUC-Fca-035846	Felis catus	44.19	1.00e-76	279.00
IUUC-Fox-037670	Fusarium oxysporum	47.21	6.00e-53	200.00
IUUC-Fso-038243	Fusarium solani	48.07	4.00e-53	201.00
IUUC-Ggr-039975	Gaeumannomyces graminis	44.86	5.00e-47	181.00
IUUC-Gma-043030	Glycine max	88.32	1.00e-170	591.00
IUUC-Ggo-044699	Gorilla gorilla	44.34	1.00e-69	256.00
IUUC-Hvu-047359	Hordeum vulgare	73.56	3.00e-136	477.00
IUUC-Lpe-050899	Leersia perrieri	75.62	7.00e-128	449.00
IUUC-Laf-053639	Loxodonta africana	47.85	2.00e-81	295.00
IUUC-Meu-056267	Macropus eugenii	42.53	6.00e-50	191.00
IUUC-Mor-057001	Magnaporthe oryzae	45.71	8.00e-53	199.00
IUUC-Mpo-057608	Magnaporthe poae	43.96	3.00e-31	127.00
IUUC-Mla-059016	Melampsora laricipopulina	45.27	8.00e-41	159.00
IUUC-Mmr-060738	Microcebus murinus	48.16	1.00e-81	296.00
IUUC-Mdo-062266	Monodelphis domestica	51.92	2.00e-58	218.00
IUUC-Mac-065301	Musa acuminata	81.21	1.00e-151	528.00
IUUC-Ncr-068713	Neurospora crassa	40.00	2.00e-55	208.00
IUUC-Opr-070628	Ochotona princeps	42.05	1.00e-69	256.00
IUUC-Oba-075002	Oryza barthii	74.47	3.00e-133	467.00
IUUC-Obr-076392	Oryza brachyantha	74.07	3.00e-128	450.00
IUUC-Ogl-077271	Oryza glaberrima	74.47	3.00e-133	467.00
IUUC-Ogu-078493	Oryza glumaepatula	74.77	2.00e-134	471.00
IUUC-Oin-080084	Oryza indica	74.77	2.00e-134	471.00
IUUC-Olo-080803	Oryza longistaminata	74.47	5.00e-134	469.00
IUUC-Ome-081146	Oryza meridionalis	74.17	4.00e-133	466.00
IUUC-Oni-082146	Oryza nivara	74.77	2.00e-134	471.00
IUUC-Opu-083633	Oryza punctata	75.00	4.00e-129	453.00
IUUC-Oru-084789	Oryza rufipogon	74.77	2.00e-134	471.00
IUUC-Osa-086196	Oryza sativa	74.77	2.00e-134	471.00
IUUC-Olu-087665	Ostreococcus lucimarinus	42.67	5.00e-66	243.00
IUUC-Oga-089140	Otolemur garnettii	44.48	8.00e-77	280.00
IUUC-Pma-094568	Petromyzon marinus	45.62	3.00e-54	204.00
IUUC-Pno-095120	Phaeosphaeria nodorum	47.37	3.00e-52	197.00
IUUC-Pab-098463	Pongo abelii	47.85	1.00e-81	296.00
IUUC-Ppe-101176	Prunus persica	88.22	3.00e-167	580.00
IUUC-Pgr-103419	Puccinia graminis	45.99	3.00e-50	191.00
IUUC-Pte-104207	Pyrenophora teres	49.09	7.00e-37	145.00
IUUC-Sja-107732	Schizosaccharomyces japonicus	40.45	2.00e-58	218.00
IUUC-Spo-108371	Schizosaccharomyces pombe	42.06	9.00e-66	243.00
IUUC-Ssl-108467	Sclerotinia sclerotiorum	36.86	6.00e-45	173.00
IUUC-Sit-110630	Setaria italica	75.68	6.00e-137	479.00
IUUC-Sly-110972	Solanum lycopersicum	83.60	3.00e-152	530.00
IUUC-Stu-112185	Solanum tuberosum	84.55	7.00e-165	572.00
IUUC-Sbi-113951	Sorghum bicolor	75.38	7.00e-136	476.00
IUUC-Tsy-119109	Tarsius syrichta	47.85	2.00e-81	295.00
IUUC-Tca-121750	Theobroma cacao	86.27	3.00e-170	590.00
IUUC-Tae-124082	Triticum aestivum	73.56	9.00e-137	479.00
IUUC-Tur-126366	Triticum urartu	64.69	2.00e-102	365.00
IUUC-Tme-127187	Tuber melanosporum	41.72	4.00e-63	234.00
IUUC-Ttr-128225	Tursiops truncatus	44.44	1.00e-53	204.00
IUUC-Vpa-130552	Vicugna pacos	51.69	6.00e-58	217.00
IUUC-Vvi-130881	Vitis vinifera	87.72	2.00e-164	570.00
IUUC-Xtr-131934	Xenopus tropicalis	46.69	3.00e-82	297.00
IUUC-Yli-134487	Yarrowia lipolytica	33.43	2.00e-48	185.00
IUUC-Zma-135462	Zea mays	66.06	5.00e-112	396.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence